Locus 15385

Sequence ID dm3.chrX
Location 18,776,230 – 18,776,308
Length 78
Max. P 0.756374
window21193

overview

Window 3

Location 18,776,230 – 18,776,308
Length 78
Sequences 6
Columns 78
Reading direction forward
Mean pairwise identity 76.53
Shannon entropy 0.44181
G+C content 0.52506
Mean single sequence MFE -26.09
Consensus MFE -15.51
Energy contribution -17.90
Covariance contribution 2.39
Combinations/Pair 1.39
Mean z-score -1.49
Structure conservation index 0.59
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.60
SVM RNA-class probability 0.756374
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18776230 78 + 22422827
UGGACGGGAUGUGGAUGCAGUGCGGCUAUGUCAGCUAUAUAGCUUGCGAAUCUGCUUCCCGUUUGGAUCUGCACCACA
.((((((((.(..(((....(((((((((((.....))))))).)))).)))..).))))))))((.......))... ( -29.50, z-score =  -1.99, R)
>droEre2.scaffold_4690 9069014 78 + 18748788
UGAUCGUGAUGUGGAUAGAGUGCGGCUAUAUUAGCUAUGUAGCUUGCGAAUCAACUUCACGAUCGGUUCUGCACCACA
.((((((((.((.(((....(((((((((((.....))))))).)))).))).)).))))))))(((.....)))... ( -28.60, z-score =  -3.00, R)
>droYak2.chrX 17393388 65 + 21770863
UGAUCGGGAUGUGGAUGGAGUGCGGCUAUAUCAUCUAU-------------CAGCUUCCCGCUCGGAUCUGCACCACA
.((.(((((.((.((((((..............)))))-------------).)).))))).))((.......))... ( -18.44, z-score =   0.19, R)
>droSec1.super_8 1078894 78 + 3762037
UGGACGGGAUGUGGAUGCAGUGCGGCUAUAUCAGCUAUGUAGCUUGCGAAUCUGCUUCCCGUUUGGAUCUGCACCGCA
.((((((((.(..(((....(((((((((((.....))))))).)))).)))..).))))))))((.......))... ( -29.50, z-score =  -1.64, R)
>droSim1.chrX 14502731 78 + 17042790
UGGACGGGAUGUGGAUGCAGUGCGGCUAUAUCAGCUAUGUAGCUUGCGAAUCUGCUUCCCGUUUGGAUCUGCACCACA
.((((((((.(..(((....(((((((((((.....))))))).)))).)))..).))))))))((.......))... ( -29.50, z-score =  -1.99, R)
>dp4.chrXL_group1e 3195841 66 + 12523060
UGAUGGGGGACUGGAUAUGGUCCGGCUAUAUC-GCUCU-------GCAAAUCAGCUCCCUGUUGGGAUCCGCAC----
.(((((((..((((((((((.....)))))))-((...-------))....)))..)))))))...........---- ( -21.00, z-score =  -0.49, R)
>consensus
UGAACGGGAUGUGGAUGCAGUGCGGCUAUAUCAGCUAUGUAGCUUGCGAAUCAGCUUCCCGUUUGGAUCUGCACCACA
.((((((((.(..(((....(((((((((((.....))))))).)))).)))..).)))))))).............. (-15.51 = -17.90 +   2.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:15 2011