| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,761,808 – 18,761,923 |
| Length | 115 |
| Max. P | 0.618019 |
| Location | 18,761,808 – 18,761,923 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 76.54 |
| Shannon entropy | 0.40424 |
| G+C content | 0.33923 |
| Mean single sequence MFE | -25.00 |
| Consensus MFE | -8.36 |
| Energy contribution | -8.96 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.618019 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18761808 115 + 22422827 UCAAUCGAUAAUUAUACUGAUAAAUUCCUUGUCCGUUGUGUGUAAAAGCCAAAUGGAAAUGGCCUUUAUACCGAAUUGCACAAAACCCAAGUGUAUUUGAUUGAAAAUAGAGUAU ((((((((....(((((((((((.....)))))..(((.(((((((.((((........)))).))))))))))...............)))))).))))))))........... ( -26.70, z-score = -3.43, R) >droSim1.chrX 14486406 115 + 17042790 UCAAUCGAUAAUUAUACUGAUAAAUUCCUUGUCCGUUGUGAGUAAAAGGCAAAUGGAAAUGGCCUUUAUACCGAAUUGCACAAAACCCAAGUGUAUUUGAUUGAAAAUAGAGUAU ((((((((....(((((((((((.....)))))..(((((.(((((((((..((....)).)))))).))).......)))))......)))))).))))))))........... ( -24.60, z-score = -2.28, R) >droSec1.super_8 1064524 115 + 3762037 UCAAUCGAUAAUUAUACUGAUAAAUUCCUUGUCCGUUGUGUGUAAAAGGCAAAUGGAAAUGGCCUUUAUACCGAAUUGCACAAAACCCAAGUGUAUUUGAUUGAAAAUAGAGUAU ((((((((....(((((((((((.....))))).(((.((((((((((((..((....)).))))).........))))))).)))...)))))).))))))))........... ( -27.00, z-score = -2.97, R) >droYak2.chrX 17378685 94 + 21770863 ----------------UUAAUCGACGAUU--UCAGUUGUCUGCAAAAGGCAAAUGAAAAUGCCUUUUAUACCGAAAUGCACAUUAGCCAAGUG---UCGGUUGAAAAUAGAGUAU ----------------((((((((((.((--(((.((((((.....)))))).))))).(((.((((.....)))).)))...........))---))))))))........... ( -23.30, z-score = -2.52, R) >droEre2.scaffold_4690 9054734 102 + 18748788 -----------CUA-AUUGAUAAAUACCUUGUCAGUUGU-CGUCAAAAGGAAAUUGAAAUGCCUUUUAUACCGAAAUGCACAUGACCCAUGGGUAUUCGGUAGAAAAUAGUAAAU -----------.((-((((((((.....)))))))))).-..((((((((...........)))))).(((((((.(((.((((...)))).))))))))))))........... ( -23.40, z-score = -2.23, R) >consensus UCAAUCGAUAAUUAUACUGAUAAAUUCCUUGUCCGUUGUGUGUAAAAGGCAAAUGGAAAUGGCCUUUAUACCGAAUUGCACAAAACCCAAGUGUAUUUGAUUGAAAAUAGAGUAU ................((((((((..((...((((((..............))))))...))..)))))..((((.(((((.........)))))))))........)))..... ( -8.36 = -8.96 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:13 2011