| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,731,313 – 18,731,365 |
| Length | 52 |
| Max. P | 0.608613 |
| Location | 18,731,313 – 18,731,365 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 97.40 |
| Shannon entropy | 0.03532 |
| G+C content | 0.61846 |
| Mean single sequence MFE | -16.30 |
| Consensus MFE | -15.83 |
| Energy contribution | -15.83 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.608613 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18731313 52 + 22422827 GGGUGUUUAUCGAGUGCCGCUGGUGACUAACACGCCCGGUGCUUCCUGUCCC (((....((..(((..(((..((((.......)))))))..)))..)).))) ( -16.10, z-score = -0.79, R) >droSec1.super_8 1029853 50 + 3762037 GGGUGUUUAUCGAGUGCCGCUGGUGACUAA--CGCCCGGUGCUUCCUGUCCC (((....((..(((..(((..((((.....--)))))))..)))..)).))) ( -16.40, z-score = -1.29, R) >droSim1.chrX 14469786 50 + 17042790 GGGUGUUUAUCGAGUGCCGCUGGUGACUAA--CGCCCGGUGCUUCCUGUCCC (((....((..(((..(((..((((.....--)))))))..)))..)).))) ( -16.40, z-score = -1.29, R) >consensus GGGUGUUUAUCGAGUGCCGCUGGUGACUAA__CGCCCGGUGCUUCCUGUCCC (((....((..(((..(((..((((.......)))))))..)))..)).))) (-15.83 = -15.83 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:08 2011