| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,721,651 – 18,721,739 |
| Length | 88 |
| Max. P | 0.855583 |
| Location | 18,721,651 – 18,721,739 |
|---|---|
| Length | 88 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 75.89 |
| Shannon entropy | 0.46474 |
| G+C content | 0.43076 |
| Mean single sequence MFE | -18.99 |
| Consensus MFE | -12.92 |
| Energy contribution | -13.59 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.855583 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18721651 88 + 22422827 GUUUCAUUUCACGCGUACAUGCCAGAAA----CUCACGAGCCCCAAA--UUGAUGUGCAGUGAAAAUGAAACACAGUUGGAAAUAACGCAAAAU ((((((((((((..((((((....(...----..).(((........--))))))))).))).)))))))))...((((....))))....... ( -19.80, z-score = -1.69, R) >droSim1.chrX 14460248 85 + 17042790 GUUUCAUUUCACGCGUACAUGCCAGAA-----CUCACGAGCCCCAAAA-UUGAUGUGCAGUGAAAAUGAAACACAGUUGGAAA--ACGCAAAU- ((((((((((((..((((((((..(..-----....)..))..((...-.)))))))).))).)))))))))...(((....)--))......- ( -20.50, z-score = -1.79, R) >droSec1.super_8 1020277 85 + 3762037 GUUUCAUUUCACGCGUACAUGCCAGAA-----CUCACGAGCCCCAAAA-UUGAUGUGCAGUGAAAAUGAAACACAGUUGGAAA--ACGCAAAU- ((((((((((((..((((((((..(..-----....)..))..((...-.)))))))).))).)))))))))...(((....)--))......- ( -20.50, z-score = -1.79, R) >droYak2.chrX 17338719 86 + 21770863 GUUUCAUUUCACGCGUACAUGCCAGAA-----CUCACGAGCCCCAAAA-UUGAUGUGCAGUGCAAAUGAAACACAGUUUGAAA-AACGCAAAU- ((((((((((((..((((((((..(..-----....)..))..((...-.)))))))).))).)))))))))...(((((...-....)))))- ( -18.70, z-score = -1.20, R) >droEre2.scaffold_4690 9015435 79 + 18748788 GUUUCAUUUCACGCGUACAUGCCCGAA-----CUCACGAGCCCCAAA--UUGAUGUGCAGUGAAAAUGAAACACAGUUUGAAA-AAC------- ((((((((((((..((((((((.((..-----....)).))......--...)))))).))).)))))))))...........-...------- ( -20.20, z-score = -2.81, R) >droAna3.scaffold_13047 1421811 85 - 1816235 GUUUCAUUUCAUAUGUACUUGAAAUUC------UCACGAGCCCCAAAUAUAAACGUGCAUUGCAAUGGAACCGUUUUCUCAAA---UACAGAGU ((((((((.((.((((((.(((.....------))).(.....)..........)))))))).))))))))......(((...---....))). ( -13.00, z-score = -0.57, R) >dp4.chrXL_group3a 2192637 88 - 2690836 GUUUCAUUUCACGUGUGCAUGCAACACACUCACUCACGAGCCCCCAG----GGUGCAGGGUGCAG-UGCAACACAAGCAGCAA-ACCGCCAAAU ............((.(((.(((....(((((((((....((((...)----)))...))))).))-))........)))))).-))........ ( -20.20, z-score = 1.13, R) >consensus GUUUCAUUUCACGCGUACAUGCCAGAA_____CUCACGAGCCCCAAA__UUGAUGUGCAGUGAAAAUGAAACACAGUUGGAAA_AACGCAAAU_ ((((((((((((..((((((............((....))............)))))).))).)))))))))...................... (-12.92 = -13.59 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:07 2011