| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,713,540 – 18,713,638 |
| Length | 98 |
| Max. P | 0.500000 |
| Location | 18,713,540 – 18,713,638 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.75 |
| Shannon entropy | 0.33301 |
| G+C content | 0.46950 |
| Mean single sequence MFE | -24.97 |
| Consensus MFE | -16.33 |
| Energy contribution | -16.71 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 18713540 98 - 22422827 CGGUAACUCCCACCUUAACCCGGAAUUUAAACGGAAAUACGUUUUUCUGGGCCAACUUGAACAAUUUACCCCAUUCUACCCACGUUUCAAGCUGGCCU---------------------- .(((.......)))......(((((...(((((......))))))))))(((((.((((((........................)))))).))))).---------------------- ( -22.36, z-score = -1.72, R) >droEre2.scaffold_4690 9007455 117 - 18748788 CUGUAACGCCCACCUUAGCCCGGAACUUAAGCGGAAAUACGUUUUUCUGGGCCAAGCUGAACCAUUUACCCCCUUU---ACCCCUUUCAAGCUGGUUUAUGUGACUCCCCUUUCGUCACA .............(((.((((((((...(((((......))))))))))))).))).(((((((............---.............)))))))((((((.........)))))) ( -28.21, z-score = -1.99, R) >droSec1.super_8 1012304 117 - 3762037 CGGGAACUCCCACCUUAACCCGGAAUUUAAACGGAAAUACGUUUUUCUGGGCCAAAUUGAACAAUUUACCCCAUUCU--CCACGUUUUAAGCUGGCCUCUGCGAUUUCCCUACC-UCACA .(((((.(((((.(((((..(((((...(((((......))))))))((((..(((((....)))))..))))....--...))..))))).))).......)).)))))....-..... ( -26.11, z-score = -1.65, R) >droSim1.chrX 14453324 117 - 17042790 CGGGAACUCCCACCUUAACCCGGAAUUUAAACGGAAAUACGUUUUUCUGGGCCAAAUUGAACAAUUUACCCCAUUCU--CCACGUUUUAAGCUGGCCUCUGCGACUUUCCUACC-UCACA .(((((.(((((.(((((..(((((...(((((......))))))))((((..(((((....)))))..))))....--...))..))))).))).......)).)))))....-..... ( -23.21, z-score = -0.78, R) >consensus CGGGAACUCCCACCUUAACCCGGAAUUUAAACGGAAAUACGUUUUUCUGGGCCAAAUUGAACAAUUUACCCCAUUCU__CCACGUUUCAAGCUGGCCUCUGCGACUUCCCUACC_UCACA .(((....)))........((((((...(((((......)))))))))))((((..(((((........................)))))..))))........................ (-16.33 = -16.71 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:06 2011