| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,708,783 – 18,708,895 |
| Length | 112 |
| Max. P | 0.855056 |
| Location | 18,708,783 – 18,708,895 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.35 |
| Shannon entropy | 0.19522 |
| G+C content | 0.50618 |
| Mean single sequence MFE | -38.90 |
| Consensus MFE | -30.90 |
| Energy contribution | -32.30 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.855056 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18708783 112 - 22422827 GCUGUCUCCCAUUAC---UUUUGGGGUC-----GGCCUUCGUGAGCCAAGCUGACGUAAGGCCGAAAGCGUUGAUCGACUUGGGCAGGCUUCACUGUAGAUCGAAUCAACAAACAUUUUU (((...(((((....---...)))))((-----(((((((((.(((...))).))).)))))))).)))(((((((((.((..((((......)))).))))).)))))).......... ( -44.90, z-score = -4.14, R) >droEre2.scaffold_4690 9003373 112 - 18748788 GCUGUCUGCCAUUCA---UUUUGGGGUC-----GGCCAUCGUGAGUCAAGCUGACGUAAGGCCAAAAGCGUCGAUCGACUCGGCCAGGCUCCACUGUAGAUCGAGUCAACAAACAUUUUU (.((.((.(.((..(---(..(((((((-----((((..(((.((.....)).)))...))))....(.(((((.....)))))).)))))))..))..)).))).)).).......... ( -33.20, z-score = -0.67, R) >droYak2.chrX 17326249 115 - 21770863 GCUGUCACCCACUACAGAUUGUGAUGUC-----CGCCUUCGUGAGUGAAGCUGACGUAAGGCAAAAGGCGCCGAUCGACUUGGGCAGGCUCCACUGUAGAUCGAGUCAACAAACAUUUUU ................(((((.(.((((-----.((((((((.((.....)).))).)))))....))))))))))(((((((((((......))))...)))))))............. ( -32.80, z-score = -0.24, R) >droSec1.super_8 1007459 117 - 3762037 GCUGUCUCCCAUUAC---UUUUGGGGUCGUUUUGGCCUUCGUGAGCCAAGCUGACGUAAGGCCGAAAGCGUUGAUCGACUUGGGCAGGCUCCACUGUAGAUCGAAUCAACAAACAUUUUU ((((.(.((((....---...))))).)..((((((((((((.(((...))).))).))))))))))))(((((((((.((..((((......)))).))))).)))))).......... ( -43.90, z-score = -3.35, R) >droSim1.chrX 14448577 117 - 17042790 GCUGUCUCCCAUUAC---UUUUGGGGUCGUUUUGGCCUUCGUGAGCCAAGCUGACGUAAGGCCGAAAGCGCUGAUCGACUUGGGCAGGCUCCACUGUAGAUCGAAUCAACAAACAUUUUU ((((.(.((((....---...))))).)..((((((((((((.(((...))).))).))))))))))))(.(((((((.((..((((......)))).))))).)))).).......... ( -39.70, z-score = -1.96, R) >consensus GCUGUCUCCCAUUAC___UUUUGGGGUC_____GGCCUUCGUGAGCCAAGCUGACGUAAGGCCGAAAGCGUUGAUCGACUUGGGCAGGCUCCACUGUAGAUCGAAUCAACAAACAUUUUU (((...(((((..........))))).......(((((((((.(((...))).))).))))))...)))(((((((((.((..((((......)))).))))).)))))).......... (-30.90 = -32.30 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:05 2011