| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,707,447 – 18,707,552 |
| Length | 105 |
| Max. P | 0.605804 |
| Location | 18,707,447 – 18,707,552 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 90.63 |
| Shannon entropy | 0.15336 |
| G+C content | 0.44603 |
| Mean single sequence MFE | -21.02 |
| Consensus MFE | -19.67 |
| Energy contribution | -19.68 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.605804 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18707447 105 + 22422827 AGCACAUCCAAAUCGCAUCGGGCAACAUGGAGACAUAAGCACCAGCUAGGCGGAAUAACAAGAAGGCCCAACUAGAAGAAGAAUAGAAGAACUCUGUAUUUUGCA ..............((...((((...(((....))).(((....)))..................))))........((((.(((((.....))))).)))))). ( -20.40, z-score = -0.39, R) >droEre2.scaffold_4690 9002080 90 + 18748788 --------------GCAUCGGGCAACAUGGAAACAUAACCACCAGCUAGGCGGAAUAACAAGAAAGCCCAUCUAGAAGAAGAAUAGAA-AACUCUGUAUUUUGCA --------------((...((((...(((....)))..((.((.....)).))............))))........((((.(((((.-...))))).)))))). ( -22.90, z-score = -3.01, R) >droSec1.super_8 1006192 105 + 3762037 AGCACAUCCACAUCGCAUCGGGCAACAUGGAGACAUAAGCACCAGCUAGGCGGAAUAACAAGAAGGCCCAACUAGAAGAAGAAUAGAAGAACUCUGUAUUUUGCA ..............((...((((...(((....))).(((....)))..................))))........((((.(((((.....))))).)))))). ( -20.40, z-score = -0.36, R) >droSim1.chrX 14447276 105 + 17042790 AGCACAUCCACAUCGCAUCGGGCAACAUGGAGACAUAAGCACCAGCUAGGCGGAAUAACAAGAAGGCCCAACUAGAAGAAGAAUAGAAGAACUCUGUAUUUUGCA ..............((...((((...(((....))).(((....)))..................))))........((((.(((((.....))))).)))))). ( -20.40, z-score = -0.36, R) >consensus AGCACAUCCACAUCGCAUCGGGCAACAUGGAGACAUAAGCACCAGCUAGGCGGAAUAACAAGAAGGCCCAACUAGAAGAAGAAUAGAAGAACUCUGUAUUUUGCA ..............((...((((...(((....))).....((.((...))))............))))........((((.(((((.....))))).)))))). (-19.67 = -19.68 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:04 2011