| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,686,710 – 18,686,806 |
| Length | 96 |
| Max. P | 0.776464 |
| Location | 18,686,710 – 18,686,806 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 75.55 |
| Shannon entropy | 0.44035 |
| G+C content | 0.42258 |
| Mean single sequence MFE | -21.26 |
| Consensus MFE | -10.27 |
| Energy contribution | -11.60 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.776464 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18686710 96 - 22422827 AGGGACGUGUCAUAUGCCAUAAAUAAUUAUUGUAUUUACUUCGC-GUUUCAUCCUAUCACCCUUGCCUAUGACUCAACCUUGGUCAUGGGCAACGAA .(..(((((....((((.((((....)))).))))......)))-))..)..........(.(((((((((((.((....))))))))))))).).. ( -29.80, z-score = -3.94, R) >droEre2.scaffold_4690 8982360 84 - 18748788 AGGGACG-------UGCCAUAAAUAAU-----UAAUUACUGCGC-GUUUCAUCUUAUCAUCCUGGUCUACGACUCAUUCUUGGUCAUGGGCAACGAA .(..(((-------(((..(((.....-----...)))..))))-))..).........((...(((((.(((.((....))))).)))))...)). ( -22.20, z-score = -2.31, R) >droYak2.chrX 17303774 85 - 21770863 AGGGACG-------UGCCAUAAAUAAU-----UAAUUACUUCGCAAUUUCAUCUUAUCACCCUUGUCUAUGACUCACCCCUGGUCAUGGGCAACGAA ..(((..-------(((..........-----..........)))..)))..........(.((((((((((((.......)))))))))))).).. ( -15.85, z-score = -0.30, R) >droSec1.super_8 985565 91 - 3762037 AGGGACGUGUCAUUUGCCAUAAACAAU-----UAUUCACUUCGC-GUUUCAUCCUAUCACCCUUGUCUAUGACCCAACCUUGGUCAUGGGCAACGAA .(..(((((..................-----.........)))-))..)..........(.((((((((((((.......)))))))))))).).. ( -24.23, z-score = -2.29, R) >droSim1.chrX 14426363 91 - 17042790 AGGGACGUGUCAUAUGCCAUAAAUAAU-----UAUUCACUUCGC-GUUUCAUCCUAUCACCCUUGUCUAUGACCCAACCUUGGUCAUGGGCAACGAA .(..(((((..................-----.........)))-))..)..........(.((((((((((((.......)))))))))))).).. ( -24.23, z-score = -2.30, R) >droPer1.super_39 655511 77 + 745454 GGGGGUA-------CACAAUAAAUAUU-----UAACUACUUCG-----UACUCCUAUCAGCAUUAAAAAUGGCUCUGAUUUGG---AACGCAACGAA (((((((-------(............-----..........)-----)))))))((((((((.....)))...)))))....---........... ( -11.25, z-score = -0.68, R) >consensus AGGGACG_______UGCCAUAAAUAAU_____UAAUUACUUCGC_GUUUCAUCCUAUCACCCUUGUCUAUGACUCAACCUUGGUCAUGGGCAACGAA ............................................................(.((((((((((((.......)))))))))))).).. (-10.27 = -11.60 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:03 2011