| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,674,151 – 18,674,245 |
| Length | 94 |
| Max. P | 0.756116 |
| Location | 18,674,151 – 18,674,245 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 66.47 |
| Shannon entropy | 0.55978 |
| G+C content | 0.36220 |
| Mean single sequence MFE | -22.08 |
| Consensus MFE | -7.52 |
| Energy contribution | -6.68 |
| Covariance contribution | -0.84 |
| Combinations/Pair | 1.46 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.756116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18674151 94 - 22422827 AUAACAUACUGGAACAUACCCGC-----AUAUUAAAUUACAGCAUUUUUGAUAAUGAUAUCAGCACACA----------CAUAUGAGGGU-UCAGGGUUCUGGUUCAAAG .......((..((((..((((.(-----((((.........((.....(((((....))))))).....----------.))))).))))-.....))))..))...... ( -18.96, z-score = -1.78, R) >droEre2.scaffold_4690 8973379 87 - 18748788 ---AUAAGCUUGAGCAUACCCGC-----AUUUUAUAUUAUACAAUUUUU--UGAUAAUAUCA--GAAUAG-----------UACAGACAUAUGAGGGUACCGGUUCAAAG ---......((((((.(((((((-----((((((((((((.(((....)--))))))))).)--)))).)-----------).((......)).)))))...)))))).. ( -20.00, z-score = -3.50, R) >droYak2.chrX 17295771 102 - 21770863 ---AUAUGUUUGGGUAUACCCGCAUAUUAUGUUAUAUUACACCAUUUCU--UGAUAAUGAUAUCGAACGGGUA---ACAUCUAAAUGUGUAUGAGGGUUCUGGUUCAAAG ---((((((((((((.((((((.......(((......))).......(--(((((....)))))).))))))---..)))))))))))).((((........))))... ( -21.00, z-score = -0.03, R) >droSec1.super_8 972723 102 - 3762037 ---AUAAGCUGGAACAUACCCGC-----AUAUAAAAUUACAGCAUUUUUGAUAAUGAUAUCAGCGAGUUACCAUCGAAAUGCACACACAUAUGAGGGUUCCGGUUCGAAG ---...(((((((....((((.(-----((((.........((((((((((((....))))))(((.......)))))))))......))))).)))))))))))..... ( -24.46, z-score = -2.46, R) >droSim1.chrX 14413787 102 - 17042790 ---AUAAGCUGGAACAUACCCGC-----AUAUAAAACUACAGCAUUUUUGAUAAUGAUAUCAGCGAGUUACCAUCGAAAUGCACACACAUAUGUGGGUUUCGGUUCGAAG ---........((((..((((((-----((((.........((((((((((((....))))))(((.......)))))))))......))))))))))....)))).... ( -25.96, z-score = -2.66, R) >consensus ___AUAAGCUGGAACAUACCCGC_____AUAUUAAAUUACAGCAUUUUUGAUAAUGAUAUCAGCGAAUAA__A___A_AUGUACACACAUAUGAGGGUUCCGGUUCAAAG ...........((((..((((.....................((((......))))...............................(....).))))....)))).... ( -7.52 = -6.68 + -0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:02 2011