| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,671,079 – 18,671,196 |
| Length | 117 |
| Max. P | 0.508451 |
| Location | 18,671,079 – 18,671,196 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 82.19 |
| Shannon entropy | 0.30656 |
| G+C content | 0.58924 |
| Mean single sequence MFE | -31.36 |
| Consensus MFE | -22.16 |
| Energy contribution | -22.36 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.508451 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18671079 117 + 22422827 UACCGAUACCCCGUACCCAUCAGAAUGACCAUCCACAACCCCAUCCGGCAUCCCAGAUCCCCCGACUCCGGGCGUCUGGGGCGUGAGCAGCCACAAAACAGUUUGCUCCUUUGUUUC ..............................................(((..(((((((..((((....)))).)))))))((....)).)))(((((..((....))..)))))... ( -30.40, z-score = -1.07, R) >droEre2.scaffold_4690 8970334 98 + 18748788 --------------U-----CCCCAUACCCAUACCCAUCCCCAUCCGGAAUCCAAGAUCCCCCGACUCCGGGCGUCUGGGGCGUGAGCAGGCACAAAACAGUUUGCUCCUUUGUUUC --------------.-----((((.............(((......))).....((((..((((....)))).)))))))).(.((((((((........)))))))))........ ( -27.80, z-score = -1.13, R) >droYak2.chrX 17292687 105 + 21770863 ------UGCCCCAUA-----CCCCGUACC-AUACCCAUCCCCAUCCGGCAUCCAAAAUCCCCCGACUCCGGGCGUCUGGGGCGUGAGCAGCCACAAAACAGUUUGCUCCUUUGUUUC ------.((((((.(-----(((((((..-.)))...........(((.............))).....))).)).))))))(.((((((.(........).)))))))........ ( -26.92, z-score = -1.10, R) >droSec1.super_8 969782 117 + 3762037 UACCGACAUCCCGUAGCCAUCAGCAUGGCCAUCGCCAACCCCAUCCGGCAUCCCAGAUCCCCCGACUCCGGGCGUCUGGGGCGUGAGCAGCCAUAAAACAGUUUGCUCCUUUGUUUC ....((((.......(((((....)))))....((.(((.......(((..(((((((..((((....)))).)))))))((....)).)))........))).)).....)))).. ( -36.36, z-score = -1.63, R) >droSim1.chrX 14410760 111 + 17042790 UACCGAUACCCC------AUCAACAUGGCCAUCGCCAACCCCAUCCGGCAUCCCAGAUCCCCCGACUCCGGGCGUCUGGGGCGUGAGCAGCCACAAAACAGUUUGCUCCUUUGUUUC ....(((.....------)))....((((....)))).........(((..(((((((..((((....)))).)))))))((....)).)))(((((..((....))..)))))... ( -35.30, z-score = -2.25, R) >consensus UACCGAUACCCC_UA___AUCACCAUGCCCAUCCCCAACCCCAUCCGGCAUCCCAGAUCCCCCGACUCCGGGCGUCUGGGGCGUGAGCAGCCACAAAACAGUUUGCUCCUUUGUUUC ......................................(((((..(((.(((...)))))((((....)))).)..))))).(.(((((..(........)..))))))........ (-22.16 = -22.36 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:01 2011