| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,666,332 – 18,666,422 |
| Length | 90 |
| Max. P | 0.781558 |
| Location | 18,666,332 – 18,666,422 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 58.14 |
| Shannon entropy | 0.68384 |
| G+C content | 0.56658 |
| Mean single sequence MFE | -27.74 |
| Consensus MFE | -13.08 |
| Energy contribution | -12.64 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.64 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.781558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18666332 90 - 22422827 ----------UUCGGUAAUUCGCUUGCCCAUUGCGUCAUGUGGCAGGUUGCCCCA-GUAAUCCCG-GCCACCAUCCAGUUCGUCACUGGGUGAGCUGCUGGC-------- ----------...((((....((((((((((......))).)))))))))))...-......(((-((..(((((((((.....)))))))).)..))))).-------- ( -33.10, z-score = -1.38, R) >droYak2.chrX 17288068 82 - 21770863 ----------UUCGGUAACU--GUUGUCCAUUGCGUCAUGUGGCAAGUUGCGC---GUAAUCCCC-CCCCCCAACCCCCCAGUUCGUGCCUGGCAAAG------------ ----------..((((((((--..((.((((........)))))))))))).)---)........-............((((.......)))).....------------ ( -14.50, z-score = 0.65, R) >droSec1.super_8 964809 87 - 3762037 ----------UUCGGUAACU--GUUGCCCAUUGCGUCAUGUGGCAGGUUGCCCCA-GUAAUCCCG-GCCUCCAUCCAGUUCGUCACUGCGUGGG-AGUUGGC-------- ----------...(((((((--..(((((((......))).)))))))))))...-......(((-((..((((.((((.....)))).)))).-.))))).-------- ( -32.00, z-score = -1.74, R) >droSim1.chrX 14405712 87 - 17042790 ----------UUCGGUAACU--GUUGCCCAUUGCGUCAUGUGGCAGGUUGCCCCA-GUAAUCCCG-GCCUCCAUCCAGUUCGUCACUGCGUGGG-AGUUGGC-------- ----------...(((((((--..(((((((......))).)))))))))))...-......(((-((..((((.((((.....)))).)))).-.))))).-------- ( -32.00, z-score = -1.74, R) >dp4.chrXL_group3a 2132097 109 + 2690836 CCAACCUAAUGGCGGUUGCA-AACCAGGAAUUGUGAUGCGUAAGACGCAGCCAGAUUUAAUCACGAGCCAUGGGAUUUGGAAUUUGGAUUUGGGAAGACAAAGCAGCGGC ...........((.(((((.-...............((((.....)))).((((((((((...((((((...)).))))....)))))))))).........))))).)) ( -27.10, z-score = -0.19, R) >consensus __________UUCGGUAACU__GUUGCCCAUUGCGUCAUGUGGCAGGUUGCCCCA_GUAAUCCCG_GCCACCAUCCAGUUCGUCACUGCGUGGG_AGUUGGC________ .............(((((((....(((((((......))).)))))))))))..................((((.((((.....)))).))))................. (-13.08 = -12.64 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:00 2011