| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,665,651 – 18,665,746 |
| Length | 95 |
| Max. P | 0.810869 |
| Location | 18,665,651 – 18,665,746 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 55.15 |
| Shannon entropy | 0.79155 |
| G+C content | 0.59380 |
| Mean single sequence MFE | -29.94 |
| Consensus MFE | -11.77 |
| Energy contribution | -12.37 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.64 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810869 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18665651 95 + 22422827 -GAGCCCGAAGCUAAGAGGACGCCUCUUGACCACCACCACCACCUUGAGUUUGCCAUCGCCUUGCUUUGGGCCAGAGUCCC---UCGCCCG-------GUGGACGC--- -(.((((((((((((((((...))))))).................((........)).....))))))))))...((((.---((....)-------).))))..--- ( -29.60, z-score = -0.73, R) >dp4.chrXL_group3a 2131287 107 - 2690836 GAGGGCUGAUGUCGGAAGUAUCGUUAUUUAUCGUUGCCUCC--CUCCUGUUCGAAGCCUUUGACUUUCAAAUACCCGCUUUAAAUGCGAGGCCCAAGCCCAUUUGCCAG ..(((((((((.(....))))).............(((((.--(....(((..((((.((((.....)))).....))))..)))).)))))...)))))......... ( -26.70, z-score = -1.08, R) >droYak2.chrX 17287292 95 + 21770863 -AACCCCGAAGCCAAGAAGGCGCCUCUUGACCACCUCCA---------GUUCCCUAGCAACCCGGUUUGAAA-AGAGUCCGUCUUUCGCCGAGCUCCUGUGGACAC--- -..(((.(.((((..(((((((.(((((....(((....---------((......)).....))).....)-))))..)))))))....).))).).).))....--- ( -17.60, z-score = 1.45, R) >droSec1.super_8 964157 95 + 3762037 -GAGCCCGAAGCUAAGAGGACGUCUCUUGACCACCGCCUUG---UUGCGUUCGCCAUCGGCUCGCUUUGGGCCAGAGUCCCACCUCCUCCG-------GUGGACGC--- -(.(((((((((((((((.....))))))......(((..(---(.((....)).)).)))..))))))))))...((((.(((......)-------))))))..--- ( -36.60, z-score = -1.37, R) >droSim1.chrX 14405072 95 + 17042790 -GAGCCCGAAGCUAAGAGAACGCCUCUUGACCACCACCUUG---UUGCGUUCGCCAUCGGCUCGCUUUGGGCCAGAGUCCCACCUCCUCUG-------GUGGACGC--- -(.(((((((((.....((((((..(..(........)..)---..))))))(((...)))..))))))))))...((((.(((......)-------))))))..--- ( -39.20, z-score = -3.22, R) >consensus _GAGCCCGAAGCUAAGAGGACGCCUCUUGACCACCACCUCC___UUGCGUUCGCCAUCGGCUCGCUUUGGGCCAGAGUCCCACCUCCGCCG_______GUGGACGC___ ...(((((((((((((((.....)))))).......................(((...)))..)))))))))....((((....................))))..... (-11.77 = -12.37 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:59 2011