| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,915,340 – 11,915,404 |
| Length | 64 |
| Max. P | 0.591101 |
| Location | 11,915,340 – 11,915,404 |
|---|---|
| Length | 64 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 92.53 |
| Shannon entropy | 0.13224 |
| G+C content | 0.32705 |
| Mean single sequence MFE | -8.30 |
| Consensus MFE | -7.58 |
| Energy contribution | -7.42 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.591101 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11915340 64 - 23011544 -GGAAAAAGAAACCUACAAAAGCACAAGCUAUAUAGAAACGGAUAUUUAGUAUGUAAGUGCAAGC -....................((((..((.((((.(((.......))).))))))..)))).... ( -7.10, z-score = -0.41, R) >droEre2.scaffold_4929 13142922 62 + 26641161 ---AAAAAGAAACCUACAAAAGCACAAGUUACAUAGAAACGGAUAUUUAGUAUGUAAGUGCAGGA ---.........(((......((((...(((((((.(((......)))..)))))))))))))). ( -9.20, z-score = -1.87, R) >droYak2.chr2L 8335190 63 - 22324452 --GAAAAAGAAACCUACUAAAGCACAAGUUACAUAGAAACGGAUAUUUAGUAUGUAAGUGCAAGA --...................((((...(((((((.(((......)))..))))))))))).... ( -9.00, z-score = -1.76, R) >droSec1.super_16 114669 64 - 1878335 -GAAAAAAGAAACCUACAAAAGCACAAGCUACAUAGAAACGGAUAUUUAGUAUGUAAGUGCAAGC -....................((((..(((((.((((........))))))).))..)))).... ( -8.10, z-score = -1.18, R) >droSim1.chr2L 11722537 65 - 22036055 UAAAAAAAUAAACCUACAAAAGCACAAGCUACAUAGAAACGGAUAUUUAGUAUGUAAGUGCAAGC .....................((((..(((((.((((........))))))).))..)))).... ( -8.10, z-score = -1.03, R) >consensus __AAAAAAGAAACCUACAAAAGCACAAGCUACAUAGAAACGGAUAUUUAGUAUGUAAGUGCAAGC .....................((((....((((((.(((......)))..)))))).)))).... ( -7.58 = -7.42 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:50 2011