| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,653,099 – 18,653,158 |
| Length | 59 |
| Max. P | 0.798837 |
| Location | 18,653,099 – 18,653,158 |
|---|---|
| Length | 59 |
| Sequences | 5 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 57.23 |
| Shannon entropy | 0.72862 |
| G+C content | 0.46071 |
| Mean single sequence MFE | -10.96 |
| Consensus MFE | -6.82 |
| Energy contribution | -5.02 |
| Covariance contribution | -1.80 |
| Combinations/Pair | 2.17 |
| Mean z-score | -0.13 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.798837 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18653099 59 + 22422827 -----AACAACAAGUUCGGUGUAUACACGACCUAAAAAUGCGCGAAUGAGUAUCAAAGUACAGC--- -----........(((((.(((((.............))))))))))..((((....))))...--- ( -7.42, z-score = 0.50, R) >droYak2.chrX 17275351 62 + 21770863 -----AACACCAAGUUUUGCGUACACGCGCAGUAAAAGUGCGUCAAAAUGCGCGAAUAAGUAGCAAC -----..........((((((((.((((((.......)))))).....))))))))........... ( -15.30, z-score = -0.76, R) >droSec1.super_8 951781 59 + 3762037 -----AACACCAAGUUCGGCGUAUACACGCACUAAAAAUGCGCGAAUGAGUAUCAAAGUACAGC--- -----........(((((.(((((.............))))))))))..((((....))))...--- ( -9.32, z-score = 0.08, R) >droSim1.chrX 14392713 59 + 17042790 -----AACACCAAGUUCGGCGUAUACACGCCCUAAAAAUGCGCGAAUGAGUAUCAAAGUACAGC--- -----........(((((.(((((.............))))))))))..((((....))))...--- ( -9.32, z-score = -0.07, R) >droPer1.super_39 624192 64 - 745454 GCCCAAAUGGCCGGACAACGAAGCACUAAAGCGGACAGCUCCGGUACCGUUUUCAAGACAUCAC--- ....(((((((((((.......((......)).......)))))..))))))............--- ( -13.44, z-score = -0.37, R) >consensus _____AACACCAAGUUCGGCGUAUACACGCACUAAAAAUGCGCGAAUGAGUAUCAAAGUACAGC___ ..................((((((.............))))))........................ ( -6.82 = -5.02 + -1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:56 2011