| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,643,101 – 18,643,208 |
| Length | 107 |
| Max. P | 0.511741 |
| Location | 18,643,101 – 18,643,208 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 84.51 |
| Shannon entropy | 0.24448 |
| G+C content | 0.47297 |
| Mean single sequence MFE | -34.09 |
| Consensus MFE | -19.94 |
| Energy contribution | -22.38 |
| Covariance contribution | 2.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.511741 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18643101 107 + 22422827 -UAUUUUUACCCGUCGAAUGAGUACA----------UCUCUACGACUCACAUGAUGGGUGGGCCACUUUAGUGAUAUUAAAUCGCAGCUCAGGCCAAAUCCGUCAACGUAAAGCCGUC -...((((((..((((...(((....----------.)))..)))).....((((((((.((((......(((((.....)))))......))))..))))))))..))))))..... ( -31.10, z-score = -2.64, R) >droSim1.chrX 14385905 109 + 17042790 -UAUUUUUACCCGACGAAUAAGUGGC--------CAUCUCUGCGACUCACAUGAUGGGUGGGCCACUUUAGUGAUAUUAAAUCGCAGCUCAGGCCAAAUCCGUCAACGUAAAGUCGUC -...((((((..((((.((...((((--------(....(((((((((((.......))))).(((....)))........))))))....))))).)).))))...))))))..... ( -31.90, z-score = -2.12, R) >droSec1.super_8 945458 117 + 3762037 -UAUUUUUAACCGACGAAUGAGUGCAGUAGUGGCCAUCUCUACGACUCACAUGAUGGGUGGGCCACUUUAGUGAUAUUAAAUCGCAGCUCAUGCCAAAUCCGUCAACGUAAAGUCGUC -..........((((..(((.(((.(((.((((......)))).)))))).((((((((.(((.......(((((.....))))).......)))..)))))))).)))...)))).. ( -31.94, z-score = -1.42, R) >droYak2.chrX 17269427 115 + 21770863 UAGUUUUUACCUGACGGAUUAGUGGAGCAGUGGCCAUCUCUAGGACGCACAC---GGGUGGGCCACUUUGGUGAUAUUAAAUCGCAGCUCAGGCCAAAUCCGUCAACGUAAGGUCGUC ..(.((((((.(((((((((.((.(((((((((((..(((..(......)..---)))..)))))))...(((((.....))))).))))..))..)))))))))..)))))).)... ( -41.40, z-score = -2.75, R) >consensus _UAUUUUUACCCGACGAAUGAGUGCA________CAUCUCUACGACUCACAUGAUGGGUGGGCCACUUUAGUGAUAUUAAAUCGCAGCUCAGGCCAAAUCCGUCAACGUAAAGUCGUC ...........((((......((((((..........))))))........((((((((.((((......(((((.....)))))......))))..)))))))).......)))).. (-19.94 = -22.38 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:55 2011