| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,642,592 – 18,642,706 |
| Length | 114 |
| Max. P | 0.603809 |
| Location | 18,642,592 – 18,642,706 |
|---|---|
| Length | 114 |
| Sequences | 7 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 64.83 |
| Shannon entropy | 0.70308 |
| G+C content | 0.49900 |
| Mean single sequence MFE | -36.37 |
| Consensus MFE | -8.87 |
| Energy contribution | -10.34 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.68 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.590936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18642592 114 + 22422827 UCAAAAGGCAACAGAAUGUUGCAACCGCAUAGUUGCCCCGCCAGUUG-----GCAGGUGGAAGGGGCCAACGGAACAGACGGAGGCAAAUGCGUCUCAUGAAAGUUGCAACAAAGGACA ......(....)....((((((((((((((..((((((((((.((((-----((...........))))))))......))).))))))))))((....))..)))))))))....... ( -38.60, z-score = -1.92, R) >droEre2.scaffold_4690 8948533 116 + 18748788 -UCAAAGGCAGCAGAAUGUUGCAACCGCAUAGUUGCCCCGCCAGUUGGGCG-GUGGGCGGUGGCUGCAGC-AGAGGGAACGGAAGCAAAUGCCUCCCUUGAACGUUGCCAUAAAGGACA -.....((((((....(((((((.((((...((..(((((((.....))))-).)))).)))).))))))-)((((((..((.........))))))))....)))))).......... ( -48.20, z-score = -1.85, R) >droYak2.chrX 17268969 118 + 21770863 -UCAAAGGCAUCAAAAUGUUGCAACCGCAUAGUUGCCCCAGCUGCUGAGGAUGUGUGUGGCAGGGGCAACCAGCAGAGACGGAAGCAAAUGCGUCUCAUGAAAGUUGCAACAAAGGACA -...............(((((((((.((...((((((((.((..(...........)..)).))))))))..)).((((((.(......).))))))......)))))))))....... ( -45.90, z-score = -3.12, R) >droSec1.super_8 944947 113 + 3762037 -UCAAAGGCAUCAGAAUGUUGCAACCGCAUAGUUGCCCCGCCAGUUG-----GCAGGUGAAAGGGGCCAACGGAAGAGACGGAGGCAAAUGCGUCUCAUGAAAGUUGCAACAAAGGACA -...............(((((((((..(((.(((((((((((....)-----))........)))).))))....((((((.(......).)))))))))...)))))))))....... ( -39.30, z-score = -2.36, R) >droSim1.chrX 14385382 113 + 17042790 -UCAAAGGCAUCAUAAUGUUGCAACCGCAUAGUUGCCCCGCCAGUUG-----GCAGGUGGAAGGGGCCAACGGAAGAGACGGAGGCAAAUGCGUCUCAUGAAAGUUGCAACAAAGGACA -...............(((((((((..(((.((((((((.(((.(..-----...).)))..)))).))))....((((((.(......).)))))))))...)))))))))....... ( -40.20, z-score = -2.46, R) >droMoj3.scaffold_6308 2618014 101 + 3356042 ---AGAGGAAAAAAAGUACGCAAGUCUCAUAGUUUUCUCAUUGUCUG----CGCCAGCAAGAAAAACAAAAAAUAGAAA-AGAAAGAAAGAGGACCUUAAAUAUUUACA---------- ---.(((((((...((.((....)))).....)))))))....((((----(....)).)))........(((((...(-((.............)))...)))))...---------- ( -13.32, z-score = 0.04, R) >droAna3.scaffold_13047 704086 104 - 1816235 -UCAAAGGCAUCAGAAUGUGGCAGCCACAUAGUUGC--CAGCCCCUG------UUUCCGACAGC--CAACGACCUGCCACAGAAGGUAACAA----CUUAAAGGAAACGCCAAAGGACA -.....(((.........(((((((......)))))--))......(------(((((......--.....((((........)))).....----......)))))))))........ ( -29.05, z-score = -1.93, R) >consensus _UCAAAGGCAUCAGAAUGUUGCAACCGCAUAGUUGCCCCGCCAGUUG_____GCAGGUGGAAGGGGCAAACAGAAGAGACGGAAGCAAAUGCGUCUCAUGAAAGUUGCAACAAAGGACA .......(((((....(((((((((......))))).(((((.((.......)).))))).................))))((.((....)).))........)))))........... ( -8.87 = -10.34 + 1.48)
| Location | 18,642,592 – 18,642,706 |
|---|---|
| Length | 114 |
| Sequences | 7 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 64.83 |
| Shannon entropy | 0.70308 |
| G+C content | 0.49900 |
| Mean single sequence MFE | -35.46 |
| Consensus MFE | -8.22 |
| Energy contribution | -9.44 |
| Covariance contribution | 1.21 |
| Combinations/Pair | 1.55 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.23 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.603809 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18642592 114 - 22422827 UGUCCUUUGUUGCAACUUUCAUGAGACGCAUUUGCCUCCGUCUGUUCCGUUGGCCCCUUCCACCUGC-----CAACUGGCGGGGCAACUAUGCGGUUGCAACAUUCUGUUGCCUUUUGA .......(((((((((..((....))((((((((((.(((((......((((((...........))-----)))).))))))))))..))))))))))))))................ ( -39.30, z-score = -3.07, R) >droEre2.scaffold_4690 8948533 116 - 18748788 UGUCCUUUAUGGCAACGUUCAAGGGAGGCAUUUGCUUCCGUUCCCUCU-GCUGCAGCCACCGCCCAC-CGCCCAACUGGCGGGGCAACUAUGCGGUUGCAACAUUCUGCUGCCUUUGA- ..........((((.(....((.((((((....)))))).)).....(-(.(((((((........(-((((.....))))).(((....)))))))))).))....).)))).....- ( -39.70, z-score = -0.48, R) >droYak2.chrX 17268969 118 - 21770863 UGUCCUUUGUUGCAACUUUCAUGAGACGCAUUUGCUUCCGUCUCUGCUGGUUGCCCCUGCCACACACAUCCUCAGCAGCUGGGGCAACUAUGCGGUUGCAACAUUUUGAUGCCUUUGA- .(((...((((((((((.....((((((.(......).)))))).((((((((((((.((.................)).)))))))))).))))))))))))....)))........- ( -44.03, z-score = -3.63, R) >droSec1.super_8 944947 113 - 3762037 UGUCCUUUGUUGCAACUUUCAUGAGACGCAUUUGCCUCCGUCUCUUCCGUUGGCCCCUUUCACCUGC-----CAACUGGCGGGGCAACUAUGCGGUUGCAACAUUCUGAUGCCUUUGA- .(((...(((((((((..((....))((((((((((.(((((......((((((...........))-----)))).))))))))))..))))))))))))))....)))........- ( -40.50, z-score = -3.88, R) >droSim1.chrX 14385382 113 - 17042790 UGUCCUUUGUUGCAACUUUCAUGAGACGCAUUUGCCUCCGUCUCUUCCGUUGGCCCCUUCCACCUGC-----CAACUGGCGGGGCAACUAUGCGGUUGCAACAUUAUGAUGCCUUUGA- .(((...(((((((((..((....))((((((((((.(((((......((((((...........))-----)))).))))))))))..))))))))))))))....)))........- ( -40.50, z-score = -3.80, R) >droMoj3.scaffold_6308 2618014 101 - 3356042 ----------UGUAAAUAUUUAAGGUCCUCUUUCUUUCU-UUUCUAUUUUUUGUUUUUCUUGCUGGCG----CAGACAAUGAGAAAACUAUGAGACUUGCGUACUUUUUUUCCUCU--- ----------...........(((((.(.(..((((..(-(((((.....(((((.....(((....)----)))))))..))))))....))))...).).))))).........--- ( -11.00, z-score = 1.37, R) >droAna3.scaffold_13047 704086 104 + 1816235 UGUCCUUUGGCGUUUCCUUUAAG----UUGUUACCUUCUGUGGCAGGUCGUUG--GCUGUCGGAAA------CAGGGGCUG--GCAACUAUGUGGCUGCCACAUUCUGAUGCCUUUGA- ........((((((.......((----((((((.((((((((((((.......--.)))))....)------)))))).))--))))))((((((...))))))...)))))).....- ( -33.20, z-score = -0.67, R) >consensus UGUCCUUUGUUGCAACUUUCAUGAGACGCAUUUGCUUCCGUCUCUUCUGUUUGCCCCUUCCACCUGC_____CAACUGGCGGGGCAACUAUGCGGUUGCAACAUUCUGAUGCCUUUGA_ ...........((((((..........(((((((((.(((((...................................))))))))))..)))))))))).................... ( -8.22 = -9.44 + 1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:54 2011