| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,641,416 – 18,641,528 |
| Length | 112 |
| Max. P | 0.757219 |
| Location | 18,641,416 – 18,641,528 |
|---|---|
| Length | 112 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 63.74 |
| Shannon entropy | 0.73297 |
| G+C content | 0.57037 |
| Mean single sequence MFE | -35.86 |
| Consensus MFE | -13.77 |
| Energy contribution | -14.57 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.757219 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18641416 112 + 22422827 UUGACCCGUGCGAACCUUCCAAUGCAUUUUGUACAGCUCCUCAUCCUCCGACUGGCCAUCGUUGGCCAGAGCAUAUUUUGCCAUCCUGGAGGUCGUCGGCUGCUCACUGUCC ..(((..(((((..........)))))..((..(((((...(..((((((.(((((((....))))))).(((.....))).....))))))..)..)))))..))..))). ( -36.30, z-score = -2.22, R) >droEre2.scaffold_4690 8947342 112 + 18748788 CUGAUCCUUGCGGGCAUUCCAGUGCACGUUGUACAGCUCCUCGUCCUCCGACUGGUCGGCAGUGGCCAGCGCAGAUUGUGCCAUCCUGGAGGUCGUGGGCUGCUCGCCGUUC .........((((((......((((.....))))(((.((.((.((((((..((((((....))))))((((.....)))).....)))))).)).)))))))))))..... ( -45.40, z-score = -0.75, R) >droYak2.chrX 17267777 112 + 21770863 CUGAUCCUUGCGAGCAUUCCAAUGCAAGUUGUAGAGGUCCUCGUCCUCCGACUGGUCGGCGUUGGCCAGCGCAGCUUGUGCCCUCCUGGAGGUCGUCGGCUGCUCACCAUCC ...........(((((..((...(((((((((...((((..((((..((....))..))))..))))...)))))))))(.((((...)))).)...)).)))))....... ( -38.50, z-score = -0.09, R) >droSec1.super_8 943762 112 + 3762037 UUGAGCCGUGCGGACCUUCCAAUGCAUUUUGUACAGCUCCUCGUCCUCCGACUGGCCAUCGUUGGCCAGAGCAGAUUGUGCCAUCCUGGAGGUCGUCGGCUGCUCACUGUCG .(((((.(((((((.............)))))))((((...((.((((((.(((((((....))))))).(((.....))).....)))))).))..)))))))))...... ( -42.42, z-score = -1.90, R) >droSim1.chrX 14384197 112 + 17042790 UUGAGCAGUGCGGACCUUCCAAUGCAUUUUGUACAGCUCCUCGUCCUCCGACUGGCCAUCGUUGGCCAGAGCAGAUUGUGCCAUCCUGGAGGUCGUCGGCUGCUCACUGUCG .(((((((((((.((((.((((((......((((((((.((((((....)))((((((....))))))))).)).)))))))))..))))))))))..))))))))...... ( -44.60, z-score = -2.44, R) >droGri2.scaffold_14906 1944330 94 + 14172833 UCGCUGCAGCCGCACCCUCCAUUGCAGGCGAUGAACGUCCUCAUCUUCUGAUUUGCUUUC--CGAUCCGUCCGACUUAGUCGACUUAGGCAGUCCC---------------- ..(((((.((((((........))).)))(((((......)))))..((((.(((((.((--.((....)).))...)).))).)))))))))...---------------- ( -23.10, z-score = -0.48, R) >droWil1.scaffold_181096 1104002 90 - 12416693 CAUAUUUUUGCGUAUAUUCCAGUGCAGAUGGUAUAGUUCCUCAUCCUCGGAUUCGAUUUCGCCAUCCUGUGGCAGAGCUACGGCUUUUGA---------------------- ......(((((((((......)))).((((((..((((....(((....)))..))))..)))))).....)))))((....))......---------------------- ( -20.70, z-score = -0.14, R) >consensus UUGAUCCGUGCGGACCUUCCAAUGCAUGUUGUACAGCUCCUCGUCCUCCGACUGGCCAUCGUUGGCCAGAGCAGAUUGUGCCAUCCUGGAGGUCGUCGGCUGCUCACUGUCC ......((((((..........))))))................(((((..(((((((....))))))).(((.....)))......))))).................... (-13.77 = -14.57 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:52 2011