| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,630,709 – 18,630,825 |
| Length | 116 |
| Max. P | 0.541802 |
| Location | 18,630,709 – 18,630,825 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.99 |
| Shannon entropy | 0.22635 |
| G+C content | 0.48627 |
| Mean single sequence MFE | -35.05 |
| Consensus MFE | -28.88 |
| Energy contribution | -29.60 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541802 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18630709 116 - 22422827 CUUGUUUACCCAUGUGGCACCUAAUCUGGGGCAUCACAUGUCAUCGCGGAAAACUGCGAAACUUGCAGG--UCCGCAUGUU--CUGGCUUUUCUAAUUUGGAAUGCAAACAACAUGAUGC ..........(((((((..(((......)))..))))))).(((((((((...((((((...)))))).--)))))(((((--...((.((((......)))).))....))))))))). ( -37.70, z-score = -2.79, R) >droYak2.chrX 17257035 114 - 21770863 -----CCACCCCCCCCUC-CCAAAGCUGGGGCAUCACAUGUCAUCGCGGAAAACUGCAAAAGUUGCAGCAUUGCGCAGAUUGCGCGGCUUUUCUAAUUUGGAAUGCAAACAACAUGAUGC -----............(-(((....))))(((((((.(((.((((((.((..(((((.....)))))..)).))).))).))).)((.((((......)))).))........)))))) ( -31.30, z-score = 0.06, R) >droEre2.scaffold_4690 8937357 116 - 18748788 UUUGUUUACCCAUGCGGCACCUAAUCUGGGGCAUCACAUGUCAUUGCGGAAAAGUGCGAAGCUUGCAGC--UCCGCGGGCU--GUGGCUUUUCUCAUUUGGAAUGCAAACAACAUGAUGC ........((((..............))))((((((..(((..(((((...(((((.((((((.(((((--(.....))))--))))))))...)))))....)))))...))))))))) ( -33.34, z-score = 0.43, R) >droSec1.super_8 933249 116 - 3762037 CUUGUUUACCCAUGUGGCACCUAAUCUGGGGCAUCACAUGUCAUCGCGGAAAACUGCGAAACUUGCAGG--ACCGCGUGUU--CUGGCUUUUCUAAUUUGGAAUGCAAACAACAUGAUGC ..........(((((((..(((......)))..))))))).((((((((....((((((...)))))).--.))))(((((--...((.((((......)))).))....))))))))). ( -34.90, z-score = -1.86, R) >droSim1.chrX 14366495 116 - 17042790 CUUGUUUACCCAUGUGGCACCUAAUCUGGGGCAUCACAUGUCAUCGCGGAAAACUGCGAAACUUGCAGG--UCCGCGUGUU--CUGGCUUUUCUAAUUUGGAAUGCAAACAACAUGAUGC ..........(((((((..(((......)))..))))))).(((((((((...((((((...)))))).--)))))(((((--...((.((((......)))).))....))))))))). ( -38.00, z-score = -2.65, R) >consensus CUUGUUUACCCAUGUGGCACCUAAUCUGGGGCAUCACAUGUCAUCGCGGAAAACUGCGAAACUUGCAGG__UCCGCGUGUU__CUGGCUUUUCUAAUUUGGAAUGCAAACAACAUGAUGC ........((((.((........)).))))((((((..(((....(((((...((((((...))))))...)))))..........((.((((......)))).))..)))...)))))) (-28.88 = -29.60 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:51 2011