| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,619,021 – 18,619,164 |
| Length | 143 |
| Max. P | 0.685080 |
| Location | 18,619,021 – 18,619,164 |
|---|---|
| Length | 143 |
| Sequences | 3 |
| Columns | 143 |
| Reading direction | reverse |
| Mean pairwise identity | 82.23 |
| Shannon entropy | 0.24226 |
| G+C content | 0.49662 |
| Mean single sequence MFE | -49.17 |
| Consensus MFE | -32.75 |
| Energy contribution | -31.77 |
| Covariance contribution | -0.98 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.685080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18619021 143 - 22422827 GCCACUUGUCCACAUUGGUCAUCAUCCCAAAGCUUUCGAGGAUGAUUUCAUACUUCGAGACCUUUGGGAAGGGCAAGAAGGGGUCGUCUAGCUGGAAAUGAAAGUGGAUUUUCUGCAGGCGUGGCCAUCGAUGAUUUCUUGCU ((..(((((((....((.....))((((((((.(((((((((((....))).)))))))).)))))))).)))))))(((..((((((..((.((((((........)))))).)).(((...)))...))))))..))))). ( -56.30, z-score = -3.43, R) >droEre2.scaffold_4690 8927147 136 - 18748788 GCCACCUGUCC-CACUGAUC-----CCCAGAGCUUUCGAGGAUGAUUUCAUACUUCGAGGCCUUUGGUUA-GGCACGAAUGGGUCGUCUAACUGGAAAUGAAAGUGGAUUUUCUGCAGGAGUGGCCGUCGCUGAAGUCUUCGC (((((((((.(-((((..((-----(.(((((.(((((((((((....))).)))))))).)))))((((-(((((......)).))))))).)))......))))).......)))))..)))).................. ( -41.60, z-score = 0.17, R) >droYak2.chrX 17246074 136 - 21770863 GCCACUUGUCU-CACUGGGC-----CCCAAAGCUUUCGAGGAUGAUUUAAUACUUCGAAGCCUUUGGGAG-UGCAGAAAUGGGUCGUCUAACUGUAAAUGGAAGUGGAUUCUGUACAGGAGUGGCCAUCGAUGAUGUCUUCGC ((((((((.((-(((((.((-----(((((((.((((((((((......)).)))))))).))))))).)-).)))...)))).)......(((((...((((.....)))).))))))))))))((((...))))....... ( -49.60, z-score = -2.96, R) >consensus GCCACUUGUCC_CACUGGUC_____CCCAAAGCUUUCGAGGAUGAUUUCAUACUUCGAGGCCUUUGGGAA_GGCAAGAAUGGGUCGUCUAACUGGAAAUGAAAGUGGAUUUUCUGCAGGAGUGGCCAUCGAUGAUGUCUUCGC (((((((((((...(((.(......(((((((.(((((((((((....))).)))))))).)))))))...).)))....))...(((((.((.........))))))).....)))))..)))).................. (-32.75 = -31.77 + -0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:50 2011