| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,608,506 – 18,608,616 |
| Length | 110 |
| Max. P | 0.964087 |
| Location | 18,608,506 – 18,608,616 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 86.67 |
| Shannon entropy | 0.19944 |
| G+C content | 0.50131 |
| Mean single sequence MFE | -18.90 |
| Consensus MFE | -15.40 |
| Energy contribution | -15.47 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.964087 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18608506 110 + 22422827 -CAGCCAACACG-AA-ACAGUUUUCAAGUGUUUCCGGCAAUGGUCCAUUGUCGUUCUAAUCGCCAUCCCAAUGGCAAUCCCCUAUUCCCAUUCCCAUUCCCCAUUCCCCAUCC -..((((....(-((-(((.(.....).))))))((((((((...))))))))..................))))...................................... ( -19.20, z-score = -2.84, R) >droYak2.chrX 17235417 99 + 21770863 ACAGCCUACACGAAACACAGUUUUCAAGUGUUUCCGGCAAUGGUCCAUUGUCGCUCUAAUCGCCAUCCCAAUGGUAAUCCCCUAUUCCCACUCCCACUC-------------- ..(((......(((((((.........))))))).(((((((...))))))))))......(((((....)))))........................-------------- ( -19.40, z-score = -2.54, R) >droSec1.super_8 910864 97 + 3762037 -CAGCCAACACACGA-ACAGUUUUCAAGUGUUUCCGGCAAUGGUCCAUUGUCGUUCUAAUCGCCAUCCCAAUGGCAAUCCCCCAGUCCCAUUCCCAUUC-------------- -..((((((((..((-(.....)))..)))))...)))(((((..(((((......)))).(((((....))))).........)..))))).......-------------- ( -18.50, z-score = -2.22, R) >droSim1.chrX 14353896 97 + 17042790 -CAGCCAACACACGA-ACAGUUUUCAAGUGUUUCCGGCAAUGGUCCAUUGUCGUUCUAAUCGCCAUCCCAAUGGCAAUCCCCCAGUCCCAUUCCCAUUC-------------- -..((((((((..((-(.....)))..)))))...)))(((((..(((((......)))).(((((....))))).........)..))))).......-------------- ( -18.50, z-score = -2.22, R) >consensus _CAGCCAACACACAA_ACAGUUUUCAAGUGUUUCCGGCAAUGGUCCAUUGUCGUUCUAAUCGCCAUCCCAAUGGCAAUCCCCCAGUCCCAUUCCCAUUC______________ ......(((((................)))))..((((((((...))))))))........(((((....)))))...................................... (-15.40 = -15.47 + 0.06)
| Location | 18,608,506 – 18,608,616 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 86.67 |
| Shannon entropy | 0.19944 |
| G+C content | 0.50131 |
| Mean single sequence MFE | -28.28 |
| Consensus MFE | -21.33 |
| Energy contribution | -21.89 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18608506 110 - 22422827 GGAUGGGGAAUGGGGAAUGGGAAUGGGAAUAGGGGAUUGCCAUUGGGAUGGCGAUUAGAACGACAAUGGACCAUUGCCGGAAACACUUGAAAACUGU-UU-CGUGUUGGCUG- .((((.(((((((.....((.(((((..((.(..(((((((((....)))))))))....)....))...))))).))(....).........))))-))-).)))).....- ( -29.10, z-score = -1.78, R) >droYak2.chrX 17235417 99 - 21770863 --------------GAGUGGGAGUGGGAAUAGGGGAUUACCAUUGGGAUGGCGAUUAGAGCGACAAUGGACCAUUGCCGGAAACACUUGAAAACUGUGUUUCGUGUAGGCUGU --------------.(((((.(((((.(((.....))).((((((.....((.......))..)))))).))))).)).(((((((.........)))))))......))).. ( -25.60, z-score = -0.75, R) >droSec1.super_8 910864 97 - 3762037 --------------GAAUGGGAAUGGGACUGGGGGAUUGCCAUUGGGAUGGCGAUUAGAACGACAAUGGACCAUUGCCGGAAACACUUGAAAACUGU-UCGUGUGUUGGCUG- --------------....((.(((((..(((.(.(((((((((....)))))))))....)..))..)..))))).))((.(((((.((((.....)-))).)))))..)).- ( -29.20, z-score = -2.34, R) >droSim1.chrX 14353896 97 - 17042790 --------------GAAUGGGAAUGGGACUGGGGGAUUGCCAUUGGGAUGGCGAUUAGAACGACAAUGGACCAUUGCCGGAAACACUUGAAAACUGU-UCGUGUGUUGGCUG- --------------....((.(((((..(((.(.(((((((((....)))))))))....)..))..)..))))).))((.(((((.((((.....)-))).)))))..)).- ( -29.20, z-score = -2.34, R) >consensus ______________GAAUGGGAAUGGGAAUAGGGGAUUGCCAUUGGGAUGGCGAUUAGAACGACAAUGGACCAUUGCCGGAAACACUUGAAAACUGU_UCGCGUGUUGGCUG_ ...............(((((..............(((((((((....)))))))))..............)))))(((...(((((.(((........))).))))))))... (-21.33 = -21.89 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:49 2011