| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,602,095 – 18,602,210 |
| Length | 115 |
| Max. P | 0.979260 |
| Location | 18,602,095 – 18,602,210 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 87.98 |
| Shannon entropy | 0.16550 |
| G+C content | 0.34976 |
| Mean single sequence MFE | -22.13 |
| Consensus MFE | -17.57 |
| Energy contribution | -17.80 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.88 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.02 |
| SVM RNA-class probability | 0.979260 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18602095 115 + 22422827 UUUGACCCAACUCCAGAUUUGAACCAACAAAUCCUUCCAACACAUAUACCAUUUUCCAUAAAUUAAAACAAUUUUAUGGAGCGCCCCCCAUUUGGAAGUCAUUUUGUUGGCUCAC ..(((.(((((....((((((......))))))(((((((.............(((((((((..........)))))))))..........))))))).......))))).))). ( -26.30, z-score = -4.23, R) >droSim1.chrX 14347167 111 + 17042790 UUUGAAGUAACUCCAGUUUCGAACCAACAAAUCCUUGCAACACAUAUAACAUUUUCCAUAAAUUAAAACA-CUUUAUGGAGC-UCUUUCACUCGGAAGUCAUUUUGUUGGCUU-- (((((((.........)))))))((((((((......................(((((((((........-.))))))))).-.(((((....)))))....))))))))...-- ( -19.60, z-score = -1.80, R) >droSec1.super_8 904409 111 + 3762037 UUUGACGUAACUCCAGUUUCGAACCAACAAAUCCUUACAAUACAUAUAACAUUUUCCAUAAAUUAAAACA-CUUUAUGGAGC-UCUUUCACUUGGAAGUCAUUUUGUUGGCUU-- .....((.(((....))).))..((((((((......................(((((((((........-.))))))))).-.(((((....)))))....))))))))...-- ( -20.50, z-score = -2.59, R) >consensus UUUGACGUAACUCCAGUUUCGAACCAACAAAUCCUUACAACACAUAUAACAUUUUCCAUAAAUUAAAACA_CUUUAUGGAGC_UCUUUCACUUGGAAGUCAUUUUGUUGGCUU__ ....................((.((((((((......................(((((((((..........)))))))))...(((((....)))))....)))))))).)).. (-17.57 = -17.80 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:48 2011