| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,599,387 – 18,599,481 |
| Length | 94 |
| Max. P | 0.838643 |
| Location | 18,599,387 – 18,599,481 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 84.41 |
| Shannon entropy | 0.21334 |
| G+C content | 0.45445 |
| Mean single sequence MFE | -25.41 |
| Consensus MFE | -15.67 |
| Energy contribution | -17.67 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.838643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18599387 94 - 22422827 UUUCUCCUAAUUAUGACGGAUAAGUGGGUUCUUUUUUGGCCGAAUUUUGGCACACACCUCAGCCCACAUUAGCCAUGUAUGUC-----ACUUACCAUAU ...........((((..((.((((((((((......(((((((...))))).))......))))))).))).))..(((....-----...))))))). ( -20.50, z-score = -1.15, R) >droSec1.super_8 901771 97 - 3762037 UUUCUUUUAAUUAUGACGGAUAAGUUGGUCCUUUUUUGGCCGAACUCUGG--CACACCUCCGCACACACAGGCCAUGCCACUUGGCCAACUUACCAUAU .................((.((((((((((......(((((........(--(........)).......)))))........)))))))))))).... ( -26.80, z-score = -3.09, R) >droSim1.chrX 14344524 97 - 17042790 UUUCUCCUAAUUAUGACGGAUAAGUUGGUCCUUUUUUGGCCGAACUCUGG--CACACCUCCGCCCACACUGGCCAUGUCACUUGGCCAACUUACCAUAU .................((.((((((((((......((((((......((--(........))).....))))))........)))))))))))).... ( -28.94, z-score = -3.67, R) >consensus UUUCUCCUAAUUAUGACGGAUAAGUUGGUCCUUUUUUGGCCGAACUCUGG__CACACCUCCGCCCACACUGGCCAUGUCACUUGGCCAACUUACCAUAU .................((.((((((((((......(((((......((...............))....)))))........)))))))))))).... (-15.67 = -17.67 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:47 2011