| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,599,132 – 18,599,227 |
| Length | 95 |
| Max. P | 0.985514 |
| Location | 18,599,132 – 18,599,227 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 85.26 |
| Shannon entropy | 0.23167 |
| G+C content | 0.50000 |
| Mean single sequence MFE | -32.45 |
| Consensus MFE | -27.94 |
| Energy contribution | -27.38 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.20 |
| SVM RNA-class probability | 0.985514 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18599132 95 - 22422827 -ACGAUGGUGGGCAAGUAGA------UUCAAUUUCGAAAUUUUUGGAAAUCCGCGCAGU--GCCAGGUCAUCGCAUGCGAUGGCCACCAUUACCCUCGACCAAU -.(((.((((((((.(..((------((....(((((.....)))))))))..)....)--))).((((((((....)))))))).....)))).)))...... ( -32.30, z-score = -2.35, R) >droYak2.chrX 17226408 95 - 21770863 AACGAUGGUGGGCAAGUAGAUUCAAUUUCAAUUUCGAAAUUUUUGGAAAUCCACGCAGCGAGCCAGGUCAUCGCAGGCGAUGGCCACCAUCGGGU--------- ..(((((((.(((..((......((((((......))))))..(((....)))....))..))).((((((((....)))))))))))))))...--------- ( -36.00, z-score = -3.81, R) >droSec1.super_8 901534 95 - 3762037 -ACGAUGGUGGGCAAGCAGA------UUCAAUUUCGAAAUUUUUGGAAAUUCACGCAGU--GCCAGGUCAUCGCAUGCGAUGGCCACCAUUACCCUCGCCCAGU -.(((.((((((((.((...------...((((((.((....)).))))))...))..)--))).((((((((....)))))))).....)))).)))...... ( -30.70, z-score = -1.78, R) >droSim1.chrX 14344287 95 - 17042790 -ACGAUGGUGGGCAAGUAGA------UUCAAUUUCGAAAUUUUUGGAAAUCCACGCAGU--GCCAGGUCAUCGCAUGCGAUGGCCACCAUUACCCUCGCCCAGU -.(((.((((((((.((.((------((....(((((.....))))))))).))....)--))).((((((((....)))))))).....)))).)))...... ( -30.80, z-score = -1.93, R) >consensus _ACGAUGGUGGGCAAGUAGA______UUCAAUUUCGAAAUUUUUGGAAAUCCACGCAGU__GCCAGGUCAUCGCAUGCGAUGGCCACCAUUACCCUCGCCCAGU ...((((((.(((.............(((......))).....(((....)))........))).((((((((....))))))))))))))............. (-27.94 = -27.38 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:46 2011