| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,587,085 – 18,587,179 |
| Length | 94 |
| Max. P | 0.557143 |
| Location | 18,587,085 – 18,587,179 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 63.17 |
| Shannon entropy | 0.59399 |
| G+C content | 0.64777 |
| Mean single sequence MFE | -37.10 |
| Consensus MFE | -19.94 |
| Energy contribution | -19.70 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.35 |
| Mean z-score | -0.69 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557143 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18587085 94 - 22422827 ---UGGAAGAGGGGGGCUGGCCGAGGGCAGCAGGUGGGGGAGCGGACCUCUGCCGGCGUCGCGUUGGAGCCAAAAGCCAGCGACCAGAGACCCCACA----- ---.......((((..((((.((..(((....((..((((......))))..))(((.((......)))))....)))..)).))))...))))...----- ( -43.70, z-score = -1.15, R) >droSim1.chrX_random 4826522 102 - 5698898 AGGUUGGAGGAGGGGGCUGGCCGAGGGCAGCAGGUGGGGGAGCGGACCUCUGCCGGCGUCGCGUUGGAGCCAAAAGCCAGCGACCAGAGGCCCCCAAACAGA ...........(((((((((.((..(((....((..((((......))))..))(((.((......)))))....)))..)).))...)))))))....... ( -44.70, z-score = -0.16, R) >droSec1.super_8 890421 102 - 3762037 AGGUUGGAGGAGGGCGCUGGCCGAGGGCAGCAGGUGGGGGAGCGGACCUCUGCCGGCGUCGCGUUGGAGCCAAAAGCCAGCGACCAGAGGCCCCCAAACAGA ..(((...((.((((.((((.((..(((....((..((((......))))..))(((.((......)))))....)))..)).))))..)))))).)))... ( -46.50, z-score = -0.62, R) >dp4.chrXL_group3a 2050219 83 + 2690836 AAGUGGAAGGUGGGA---AACCGGGGGU--CGGAUAGAAGAG-AGCCUUCUCUCAGGCUGACAU--GAGCACGAUGUUGGCAUCGGGAGGU----------- ..........(((..---..)))(((.(--(..........)-).)))((((((..((..((((--.......))))..))...)))))).----------- ( -25.30, z-score = -0.91, R) >droPer1.super_39 557604 83 + 745454 AGGUGGAUGGUGGGA---AACCGGGGGU--CGGAUAGAAGAG-AGCCUUCUCUCAGGCUGACAU--GAGCACGAUGUUGGCAUCGGGAGGU----------- ..((..(((.(((..---..)))..(((--(.((.(((((..-...))))).)).))))..)))--..)).(((((....)))))......----------- ( -25.30, z-score = -0.61, R) >consensus AGGUGGAAGGAGGGAGCUGGCCGAGGGCAGCAGGUGGGGGAGCGGACCUCUGCCGGCGUCGCGUUGGAGCCAAAAGCCAGCGACCAGAGGCCCC__A_____ ...........((..((((((....(((....((((((((......)))))))).(.....)......)))....))))))..))................. (-19.94 = -19.70 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:44 2011