| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,583,032 – 18,583,083 |
| Length | 51 |
| Max. P | 0.999044 |
| Location | 18,583,032 – 18,583,083 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 93.46 |
| Shannon entropy | 0.09003 |
| G+C content | 0.50980 |
| Mean single sequence MFE | -20.40 |
| Consensus MFE | -20.17 |
| Energy contribution | -20.50 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -4.00 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.53 |
| SVM RNA-class probability | 0.998887 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18583032 51 + 22422827 UAGCUCGCGAUGGGAGGCCAGAAUGGAAAUGGCCUCCCAUUACCACCAUUC ......(..(((((((((((.........)))))))))))..)........ ( -23.10, z-score = -4.10, R) >droSec1.super_8 886462 51 + 3762037 UAGCUCGCGAUGGGAGGCCAAAAUUGAAAUGACCUCCCAUUACCACCAUUC ......(..((((((((.((.........)).))))))))..)........ ( -15.20, z-score = -3.04, R) >droSim1.chrX_random 4822515 51 + 5698898 UAGCUUGCGAUGGGAGGCCAGAAUUGAAAUGGCCUCCCAUUACCACCAUUA ........((((((((((((.........)))))))))))).......... ( -22.90, z-score = -4.85, R) >consensus UAGCUCGCGAUGGGAGGCCAGAAUUGAAAUGGCCUCCCAUUACCACCAUUC ......(..(((((((((((.........)))))))))))..)........ (-20.17 = -20.50 + 0.33)
| Location | 18,583,032 – 18,583,083 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 93.46 |
| Shannon entropy | 0.09003 |
| G+C content | 0.50980 |
| Mean single sequence MFE | -24.67 |
| Consensus MFE | -24.89 |
| Energy contribution | -24.67 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -4.21 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.61 |
| SVM RNA-class probability | 0.999044 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18583032 51 - 22422827 GAAUGGUGGUAAUGGGAGGCCAUUUCCAUUCUGGCCUCCCAUCGCGAGCUA ...((((.(..(((((((((((.........)))))))))))..)..)))) ( -25.60, z-score = -3.90, R) >droSec1.super_8 886462 51 - 3762037 GAAUGGUGGUAAUGGGAGGUCAUUUCAAUUUUGGCCUCCCAUCGCGAGCUA ...((((.(..(((((((((((.........)))))))))))..)..)))) ( -23.70, z-score = -4.33, R) >droSim1.chrX_random 4822515 51 - 5698898 UAAUGGUGGUAAUGGGAGGCCAUUUCAAUUCUGGCCUCCCAUCGCAAGCUA ...((((.(..(((((((((((.........)))))))))))..)..)))) ( -24.70, z-score = -4.42, R) >consensus GAAUGGUGGUAAUGGGAGGCCAUUUCAAUUCUGGCCUCCCAUCGCGAGCUA ...((((.(..(((((((((((.........)))))))))))..)..)))) (-24.89 = -24.67 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:43 2011