| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,574,593 – 18,574,701 |
| Length | 108 |
| Max. P | 0.940916 |
| Location | 18,574,593 – 18,574,701 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 75.58 |
| Shannon entropy | 0.31460 |
| G+C content | 0.30875 |
| Mean single sequence MFE | -19.86 |
| Consensus MFE | -15.16 |
| Energy contribution | -15.39 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.940916 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18574593 108 - 22422827 UCGUACUACAAUAUUUAGCGCUUUCUACAUUAAGCAAUCCAAUAGCUCUUUCUGUGUGCUUUAAUAUUUAAUGGGAUUUUAUCCCAGUAAUAAUGUGGAAAAACAUUU ..(..(((.......)))..)(((((((((((((((.....((((......)))).)))).......(((.((((((...)))))).))))))))))))))....... ( -23.10, z-score = -2.53, R) >droSim1.chrX 14335284 87 - 17042790 -------------UCAUACGCUUUCUGCAGUAUACAAUGAAAUAUAUCUUUCUGUGUGCUUUAAUAAUAAAUGGGAUUUUAUCCCAGUAAUGUUGUGGAA-------- -------------.........(((..(((((((((..((((......)))))))))))............((((((...)))))).......))..)))-------- ( -19.40, z-score = -2.05, R) >droSec1.super_8 878205 87 - 3762037 -------------UCAUACGCUUUCUGCAGUAUACAAUCAAAUAUAUCUUUCUGUGUGCUUUAAUAAUAAAUGGGAUUUUAUCCCAGUAAUGUUGUGGAA-------- -------------.........(((..(((((((((................)))))))............((((((...)))))).......))..)))-------- ( -17.09, z-score = -1.45, R) >consensus _____________UCAUACGCUUUCUGCAGUAUACAAUCAAAUAUAUCUUUCUGUGUGCUUUAAUAAUAAAUGGGAUUUUAUCCCAGUAAUGUUGUGGAA________ ......................((((((((((((((................)))))))............((((((...)))))).......)))))))........ (-15.16 = -15.39 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:41 2011