| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,566,283 – 18,566,377 |
| Length | 94 |
| Max. P | 0.587375 |
| Location | 18,566,283 – 18,566,377 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 65.62 |
| Shannon entropy | 0.58792 |
| G+C content | 0.31533 |
| Mean single sequence MFE | -16.40 |
| Consensus MFE | -6.59 |
| Energy contribution | -7.03 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.587375 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18566283 94 + 22422827 -----CUAAUAUCUUAGUGUUA--GUACUACUUA--UA-UCAUAUCAUUAUGGGUGCACACGUACCUAAACUCGGUAAAAGCCUACCUGUC---UAAAAUUUAAAUG--------- -----(((((((....))))))--).........--..-......((((.(((((((....))))))).....((((......))))....---.........))))--------- ( -15.40, z-score = -0.96, R) >droEre2.scaffold_4690 8875715 96 + 18748788 -----CUAACAUCUAGUGGCUA--AUACUACUUAAAUA-UCAUGUCAUUAUGGGUGCACACGUACCUAAGAUUAGUAAAAGCGUACAUGUC---UAAAAUUUAAAUG--------- -----..........((((((.--.(((((((((....-.((((....))))(((((....)))))))))..)))))..))).))).....---.............--------- ( -17.00, z-score = -0.87, R) >droYak2.chrX 17192011 96 + 21770863 -----CCAAUAUCUAAAGGCUA--AUACUAGUCAAAUA-UCACAUCAUUAUGGGUGCACACGUACCUAAGCUCAGUAAAAGCCUACAUGUU---UAAAAUUUAAAUG--------- -----...........(((((.--.(((((((..(((.-.......))).(((((((....))))))).))).))))..))))).......---.............--------- ( -17.40, z-score = -2.05, R) >droSec1.super_8 869925 86 + 3762037 -------------UUAAUAUU----UACUACUUAAAUA-UGAUAUCAUUUUGGGUGCACACGUACCUAAACUCGGUAAAAGCCUACAUGUA---UAAAAUUUAAAUG--------- -------------....((((----((....(((.(((-((.......(((((((((....)))))))))...(((....)))..))))).---)))....))))))--------- ( -16.60, z-score = -2.71, R) >droSim1.chrX 14326776 86 + 17042790 -------------CUAAUAUU----UACUACUUAAAUA-UCAUAUCAUUAUGGGUGCACACGCACCUAAACUCGGUAAAAGCCUACAUGUA---UAAAAUUUAAAUG--------- -------------........----......((((((.-(.(((.(((..(((((((....))))))).....(((....)))...)))))---).).))))))...--------- ( -14.20, z-score = -2.26, R) >droGri2.scaffold_15074 7397374 114 + 7742996 AUAAGCCUCUAGAGCGAGUCUAGGAAAAUGUUUGACUAAUGGAAUAAUUAACUGCCCGUUCUUGCUUGA--UCGAAAAAGGCUUAAAUAUCAUUUUCCAUUUAAAAUCUAUCUAUA .(((((((...((.(((((..(((((...((.....((((......))))...))...)))))))))).--)).....)))))))............................... ( -17.80, z-score = 0.32, R) >consensus _____C_AAUAUCUUAAGGCUA__AUACUACUUAAAUA_UCAUAUCAUUAUGGGUGCACACGUACCUAAACUCGGUAAAAGCCUACAUGUC___UAAAAUUUAAAUG_________ ..................................................(((((((....)))))))................................................ ( -6.59 = -7.03 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:38 2011