Locus 15350

Sequence ID dm3.chrX
Location 18,562,465 – 18,562,577
Length 112
Max. P 0.865680
window21146 window21147

overview

Window 6

Location 18,562,465 – 18,562,577
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 98.12
Shannon entropy 0.03380
G+C content 0.52321
Mean single sequence MFE -39.52
Consensus MFE -37.50
Energy contribution -37.54
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.73
Structure conservation index 0.95
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.98
SVM RNA-class probability 0.865680
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18562465 112 + 22422827
UGUGUUUACAACACACAUUUCAAAAGUCGGUGACUGUGGCACUGAGUUAGUAGUGCGUUAAGUCAACGAACGCAGUCGCGCAGACGCCGACUGAGGACGUCGACAGAGACAG
(((((.....)))))..........(((.(((((((((((((((......))))))(((.....)))...)))))))))(..((((((......)).))))..)...))).. ( -38.90, z-score =  -1.75, R)
>droSim1.chrX 14321720 112 + 17042790
UGUGUUUACAACACACAUUUCAAAAGUCGGUGACUGUGGCACUGAGUUAGUAGUGCGUUAAGUCAACGAACGCAGUCGCGCAGACGCCGACUGAGGACGCCGACAGCGGCAG
(((((.....)))))....((...((((((((((((((((((((......))))))(((.....)))...)))))))))((....)))))))...)).((((....)))).. ( -41.40, z-score =  -1.90, R)
>droSec1.super_8 866106 112 + 3762037
UGUGUUUACAACACACAUUUCAAAAGUCGGUGACUGUGGCACUGAGUUAGUAGUGCGUUAAGUCAACGAACGCAGUCGCGCAGACGCCGACUGAGGACGUCGACAGCGGCAG
(((((.....)))))..........(((((((((((((((((((......))))))(((.....)))...)))))))))(..((((((......)).))))..)..)))).. ( -40.30, z-score =  -1.58, R)
>droYak2.chrX 17188250 112 + 21770863
UGUGUUUACAACACACAUUUCAAAAGUCGGUGACUGUGGCACUGAGUUAGUAGUGCGUUAAGUCAACGAACGCAGUCGCGCAGACGCCGACAGAGGACGUCGACAGAGGCAG
(((((.....)))))..........(((.(((((((((((((((......))))))(((.....)))...)))))))))...((((((......)).)))))))........ ( -38.50, z-score =  -1.85, R)
>droEre2.scaffold_4690 8872127 112 + 18748788
UGUGUUUACAACACACAUUUCAAAAGUCGGUGACUGUGGCACUGAGUUAGUAGUGCGUUAAGUCAACGAACGCAGUCGCGCAGACGCCGACCGAGGACGUCGACAGAGGCAG
(((((.....)))))..........(((.(((((((((((((((......))))))(((.....)))...)))))))))...((((((......)).)))))))........ ( -38.50, z-score =  -1.56, R)
>consensus
UGUGUUUACAACACACAUUUCAAAAGUCGGUGACUGUGGCACUGAGUUAGUAGUGCGUUAAGUCAACGAACGCAGUCGCGCAGACGCCGACUGAGGACGUCGACAGAGGCAG
(((((.....)))))..........(((.(((((((((((((((......))))))(((.....)))...)))))))))(..((((((......)).))))..)...))).. (-37.50 = -37.54 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 18,562,465 – 18,562,577
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 98.12
Shannon entropy 0.03380
G+C content 0.52321
Mean single sequence MFE -33.82
Consensus MFE -33.30
Energy contribution -33.22
Covariance contribution -0.08
Combinations/Pair 1.06
Mean z-score -0.95
Structure conservation index 0.98
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.08
SVM RNA-class probability 0.532524
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18562465 112 - 22422827
CUGUCUCUGUCGACGUCCUCAGUCGGCGUCUGCGCGACUGCGUUCGUUGACUUAACGCACUACUAACUCAGUGCCACAGUCACCGACUUUUGAAAUGUGUGUUGUAAACACA
..(((...(((((((..(.((((((.((....)))))))).)..))))))).....(((((........)))))..........)))........(((((.......))))) ( -35.80, z-score =  -1.78, R)
>droSim1.chrX 14321720 112 - 17042790
CUGCCGCUGUCGGCGUCCUCAGUCGGCGUCUGCGCGACUGCGUUCGUUGACUUAACGCACUACUAACUCAGUGCCACAGUCACCGACUUUUGAAAUGUGUGUUGUAAACACA
........(((((((..(.((((((.((....)))))))).)..)).(((((....(((((........)))))...))))))))))........(((((.......))))) ( -35.50, z-score =  -0.86, R)
>droSec1.super_8 866106 112 - 3762037
CUGCCGCUGUCGACGUCCUCAGUCGGCGUCUGCGCGACUGCGUUCGUUGACUUAACGCACUACUAACUCAGUGCCACAGUCACCGACUUUUGAAAUGUGUGUUGUAAACACA
(((.....(((((((..(.((((((.((....)))))))).)..))))))).....(((((........)))))..)))................(((((.......))))) ( -34.20, z-score =  -0.82, R)
>droYak2.chrX 17188250 112 - 21770863
CUGCCUCUGUCGACGUCCUCUGUCGGCGUCUGCGCGACUGCGUUCGUUGACUUAACGCACUACUAACUCAGUGCCACAGUCACCGACUUUUGAAAUGUGUGUUGUAAACACA
........(((((((.....)))))))....((((....))))(((.(((((....(((((........)))))...))))).))).........(((((.......))))) ( -30.10, z-score =  -0.37, R)
>droEre2.scaffold_4690 8872127 112 - 18748788
CUGCCUCUGUCGACGUCCUCGGUCGGCGUCUGCGCGACUGCGUUCGUUGACUUAACGCACUACUAACUCAGUGCCACAGUCACCGACUUUUGAAAUGUGUGUUGUAAACACA
(((.....(((((((..(.((((((.((....)))))))).)..))))))).....(((((........)))))..)))................(((((.......))))) ( -33.50, z-score =  -0.90, R)
>consensus
CUGCCUCUGUCGACGUCCUCAGUCGGCGUCUGCGCGACUGCGUUCGUUGACUUAACGCACUACUAACUCAGUGCCACAGUCACCGACUUUUGAAAUGUGUGUUGUAAACACA
........(((((((..(.((((((.((....)))))))).)..)))(((((....(((((........)))))...))))).))))........(((((.......))))) (-33.30 = -33.22 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:37 2011