| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,540,132 – 18,540,185 |
| Length | 53 |
| Max. P | 0.738182 |
| Location | 18,540,132 – 18,540,185 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 77.29 |
| Shannon entropy | 0.38870 |
| G+C content | 0.36039 |
| Mean single sequence MFE | -11.80 |
| Consensus MFE | -7.12 |
| Energy contribution | -6.80 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.738182 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18540132 53 + 22422827 GCGUGUACAUUU-GUAU--AUAUGUACAUAUGAACUUA-ACAAACAAGGCGAAACUC ((((((((((..-....--..)))))))).....(((.-......)))))....... ( -9.50, z-score = -1.32, R) >droYak2.chrX 17166320 56 + 21770863 GCGUGCAUAUAU-GUAUGCACAUAUGUAUAUAGGCUUAUACAAACAAGGCGAAACUC (((((((((...-.)))))))...((((((......))))))......))....... ( -15.70, z-score = -2.57, R) >droSec1.super_8 843695 53 + 3762037 GCGUGUGCAUAU-GUAU--GUAUGUACAUAUAAACUUA-ACAAACAAGGCGAAACUC ((((((((((((-....--)))))))))).....(((.-......)))))....... ( -12.10, z-score = -1.71, R) >droSim1.chrX 14311743 53 + 17042790 GCGUGUGCAUAU-GUAU--GUAUGUACAUAUAAACUUA-ACAAACAAGGCGAAACUC ((((((((((((-....--)))))))))).....(((.-......)))))....... ( -12.10, z-score = -1.71, R) >droWil1.scaffold_181096 11144671 54 + 12416693 GUACAUACAUACCGUAU--AUAUGUACAUAUAAACAAA-UCACGCACGGGUAAACCC (((((((.(((...)))--.)))))))...........-........(((....))) ( -9.60, z-score = -1.19, R) >consensus GCGUGUACAUAU_GUAU__AUAUGUACAUAUAAACUUA_ACAAACAAGGCGAAACUC ..((((((((((.......))))))))))............................ ( -7.12 = -6.80 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:35 2011