| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,537,190 – 18,537,284 |
| Length | 94 |
| Max. P | 0.864744 |
| Location | 18,537,190 – 18,537,284 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 55.72 |
| Shannon entropy | 0.76254 |
| G+C content | 0.49838 |
| Mean single sequence MFE | -26.78 |
| Consensus MFE | -9.61 |
| Energy contribution | -9.81 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.77 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.864744 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18537190 94 + 22422827 ----UAGAAUCAACAUCUGCCAUCGCAUAUUGUUGACCUUUCUGACUCGCCACUACAUGUGUGUGUGUGU--AAAUGUGAGGAGGGAAUGGGUGGAGAGG ----.....((((((..(((....)))...))))))(((((((..(((((...((((..(....)..)))--)...)))))..))))).))......... ( -26.40, z-score = -0.55, R) >droWil1.scaffold_181096 11139905 90 + 12416693 UGGGUGGGUUU--UGUUUGGCCUUUCCGAGAGACGAGUAGACUGAGACGGAGACAGAUAGCUAGAGAGCGAGAGAGACAGACUACUAACCGG-------- .(((.(((((.--.....))))).)))........(((((.(((....(....).....(((....)))........))).)))))......-------- ( -21.50, z-score = -0.29, R) >droEre2.scaffold_4690 8846788 76 + 18748788 ----UAGAAUCAACAUCUGCCGUCGCAUAUUGUUGACCUUUCUGACUCGCCUCUGUGUGUGUGUACAUG---GGAGGCGGAGG----------------- ----(((((((((((..(((....)))...))))))...))))).((((((((((((((....))))).---)))))).))).----------------- ( -25.60, z-score = -1.79, R) >droYak2.chrX 17163510 83 + 21770863 ----UAGAAUCAACAUCUGCCAUCGCAUAUCGUUGACCUUUCUGACUCGCCUCUGUAUGUGUGGAGGC----AAGAGCGGGGAAGGGGAGG--------- ----.....(((((((.(((....))).)).)))))(((((((..((((((((..(....)..)))))----..)))..))))))).....--------- ( -29.10, z-score = -1.64, R) >droSec1.super_8 840932 96 + 3762037 ----UAGAAUCAACAUAUGCCAUCGCAUAUUGUUGACCUUUCUGACUCGCCACUACAUGUGUGUGUGUGUGUAAAUGCGAGGAGGGAAUGGGAGGAAAGG ----.....(((((((((((....))))).))))))(((((((..(((((((((((((....))))).))).....)))))..))))).))......... ( -31.30, z-score = -2.49, R) >consensus ____UAGAAUCAACAUCUGCCAUCGCAUAUUGUUGACCUUUCUGACUCGCCACUACAUGUGUGUAGGUG___AAAGGCGGGGAAGGAAUGGG________ .........((((((..(((....)))...))))))((((((((.........(((((......)))))........))))))))............... ( -9.61 = -9.81 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:34 2011