| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,533,331 – 18,533,422 |
| Length | 91 |
| Max. P | 0.962883 |
| Location | 18,533,331 – 18,533,422 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 89.50 |
| Shannon entropy | 0.17533 |
| G+C content | 0.66818 |
| Mean single sequence MFE | -44.10 |
| Consensus MFE | -37.58 |
| Energy contribution | -37.42 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.71 |
| SVM RNA-class probability | 0.962883 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18533331 91 + 22422827 GCGGUGGUUUCGAGGGAGGCGGCAGGGUGCUGGCAUUUCC------GCUGGCGCUGGCGUUAGCGUUUGCGCGGGCGUGGGCACGAACACUGAAAUC .(((((...(((.(((((.((((.....)))).)..))))------(((.(((((.((((........)))).))))).))).))).)))))..... ( -41.30, z-score = -2.09, R) >droSim1.chrX 14304277 91 + 17042790 GCGGUGGUUUCGAGGGAGGCGGCAGGGUGCUGGCAUUGCC------GCUGGCGCUGGCGUUAGCGUUGGCGCGGGCGUGGGCACGAACACUGAAAUC .((((((((((....)))))......((((((((...)))------(((.((((..(((....)))..)))).)))...)))))...)))))..... ( -42.90, z-score = -2.29, R) >droSec1.super_8 837112 91 + 3762037 GCGGUGGUUUCGAGGGAGGCGGCAGGUUGCUGGCAUUGCC------GCUGGCGCUGGCGUUAGCGUUGGCGCGGGCGUGGGCACGAACACUGAAAUC .(((((...(((.....(.((((.....)))).)..((((------(((.((((..(((....)))..)))).)))...))))))).)))))..... ( -42.20, z-score = -2.05, R) >droYak2.chrX 17159444 97 + 21770863 GCGGCGGUUUCGAGGGAGGCGGCUGAAUGCUGGCACUUCCACUGGCGCUGGUGCUGGCGCUGGCGUUGGUGCGAGCGUGGGCACGAACACUGAAAUC .((((.(((((....))))).))))..((((.((.(((.(((..((((..(((....)))..))))..))).))).)).)))).............. ( -46.10, z-score = -2.52, R) >droEre2.scaffold_4690 8842884 97 + 18748788 GCGGUGGUUUCGAGGGAGGCGGCACGUUGCUGGCACUUCCACUGGCGCUGGCGCUGGCGUUGGCGUUGGUGCGGGCGUGGGCACGAACACUGAAAUC .(((((...(((.((((((((((.....))).)).))))).((.(((((.((((..(((....)))..)))).))))).))..))).)))))..... ( -48.00, z-score = -2.86, R) >consensus GCGGUGGUUUCGAGGGAGGCGGCAGGGUGCUGGCAUUUCC______GCUGGCGCUGGCGUUAGCGUUGGCGCGGGCGUGGGCACGAACACUGAAAUC .(((((...(((.((((((((((.....))).)).)))))......(((.(((((.(((((......))))).))))).))).))).)))))..... (-37.58 = -37.42 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:31 2011