| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,525,934 – 18,526,027 |
| Length | 93 |
| Max. P | 0.876165 |
| Location | 18,525,934 – 18,526,027 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 81.36 |
| Shannon entropy | 0.30581 |
| G+C content | 0.46550 |
| Mean single sequence MFE | -28.55 |
| Consensus MFE | -21.21 |
| Energy contribution | -21.03 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.876165 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18525934 93 + 22422827 AGUGAAGUCAUGAUCUUGGGGCUGCCAAAGGGAACAAUUUCUU-GGCAAGAAGGAGAGGGGACUUGACUUUGUGUUAUACUCGUGUUCCACGCU-- ((((...........((((.....))))..((((((......(-((((.((((..(((....)))..)))).)))))......)))))).))))-- ( -28.10, z-score = -1.06, R) >droYak2.chrX 17153751 95 + 21770863 AGUGAAGUCAUGAUCUUGGGGCUGCCAAAGGGAACCAUUUCUU-GGCAAGAUGGAGAGAGGAUUUGACUUUGGUAUAGAACAGAACAGAGGUUUCA ..((((..(.((.(((..(..(((((((((.(((((.((((((-.(.....).)))))))).)))..)))))))..))..)))).))..)..)))) ( -22.80, z-score = -0.02, R) >droSec1.super_8 829908 85 + 3762037 AGUGAAGUCAUGAUCUUGGGUCUGCCAAAGGGAACACUUUCUUUGGCAAGAAGGAGAGGGGACUUGACUUUGGGUUAUACUCGCU----------- (((((.((.(((((((..((((((((((((..(....)..)))))))).......(((....)))))))..))))))))))))))----------- ( -34.00, z-score = -3.94, R) >droSim1.chrX_random 4803577 84 + 5698898 AGUGAAGUCAUGAUCUUGGGUCUGCCAAAGGGAACACUUUCUU-GGCAAGAAGGAGAGGGGACUUGACUUUGGGUUAUACUCGCU----------- (((((.((.(((((((..((((((((((.(..(....)..)))-)))).......(((....)))))))..))))))))))))))----------- ( -29.30, z-score = -2.43, R) >consensus AGUGAAGUCAUGAUCUUGGGGCUGCCAAAGGGAACAAUUUCUU_GGCAAGAAGGAGAGGGGACUUGACUUUGGGUUAUACUCGCU___________ (((.(((((....((((.....((((.(((..(....)..))).)))).....))))...))))).)))........................... (-21.21 = -21.03 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:30 2011