| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,519,515 – 18,519,607 |
| Length | 92 |
| Max. P | 0.898016 |
| Location | 18,519,515 – 18,519,607 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 66.07 |
| Shannon entropy | 0.55752 |
| G+C content | 0.63986 |
| Mean single sequence MFE | -33.06 |
| Consensus MFE | -21.34 |
| Energy contribution | -22.50 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.30 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.898016 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18519515 92 + 22422827 ACUAAUGACUGCUCGCUC-U--GUUCCACCAAGGAUGCCCGCUGGGAGUUCAUGGCCUGGCCC-GCCUCCUGCCAGGCCACUCA---------AGUGGCCGAGCU ..........(((((...-.--..(((.....)))...(((((..((((....((((((((..-.......)))))))))))).---------))))).))))). ( -36.20, z-score = -1.30, R) >droEre2.scaffold_4690 8829855 95 + 18748788 ACUAACGGCUACCCAUUACCCAGGGCCACCAAGGACUCCCGCUGGGAGCUCAUGGCCCGGCCC-GCCGCCUGCCGGGCACCUCA---------AGUGGCCGACCC .....(((((((..........((((((....(..(((((...)))))..).)))))).((((-(........)))))......---------.))))))).... ( -41.80, z-score = -1.69, R) >droSec1.super_8 823582 79 + 3762037 --------------ACUAAU--GACCCACCAAGGAUUCCCGCUGGGAGUUCAUGGCCUGGCCC-GCCUCCUGCCAGGCCACUCA---------AGUGGCCGAGCU --------------......--...((((...((((((((...)))))))).(((((((((..-.......)))))))))....---------.))))....... ( -32.40, z-score = -1.88, R) >droSim1.chrX 14293973 79 + 17042790 --------------ACUAAU--GACCCACCAAGGAUGCCCGCUGGGAGUUCAUGGCCUGGCCC-GCCUCCUGCCAGGCCACUCA---------AGUGGCCGAGCU --------------......--..((((....((....))..))))(((((.((((..((...-.))....))))((((((...---------.))))))))))) ( -31.30, z-score = -1.14, R) >droGri2.scaffold_15203 1329800 94 + 11997470 ---------GUCACAGUCGC-AGUUCGAGUCACAGUUCCCGCUAC-AGUUGCCGGUCUAGCCCAGUCCCCUGCCAGGCGUAUCACAUUGGACUGGUGGACGAUCU ---------(((.(((((.(-(((..((...((((..((.((...-....)).)).)).((((((....)))...))))).))..)))))))))...)))..... ( -23.60, z-score = 1.08, R) >consensus ___________C_CACUAAU__GACCCACCAAGGAUUCCCGCUGGGAGUUCAUGGCCUGGCCC_GCCUCCUGCCAGGCCACUCA_________AGUGGCCGAGCU .........................((((...(((((((.....))))))).(((((((((..........)))))))))..............))))....... (-21.34 = -22.50 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:29 2011