| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,517,779 – 18,517,834 |
| Length | 55 |
| Max. P | 0.964004 |
| Location | 18,517,779 – 18,517,834 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 91.64 |
| Shannon entropy | 0.14626 |
| G+C content | 0.58182 |
| Mean single sequence MFE | -20.26 |
| Consensus MFE | -18.48 |
| Energy contribution | -18.44 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.964004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18517779 55 - 22422827 CGUGUCUAUGGAUGCCAAAGAUCUUCUCGAGGAGAGAGGAGCGGCAUUUGGAUGG ...(((((..((((((.....(((((((.....)))))))..))))))))))).. ( -20.00, z-score = -2.64, R) >droSim1.chrX 14292182 55 - 17042790 CGUGUCUAUGGAUGCCAGAGAUCUUCUCGAGAAGGGAGGAGCGGCAUGUGGAUGG ...((((((..(((((.(...(((((((.....))))))).)))))))))))).. ( -19.90, z-score = -2.46, R) >droSec1.super_8 821833 55 - 3762037 CGUGUCUAUGGAUGCCAGAGAUCUUCUCGAGAAGGGAGGAGCGGCACGUGGAUGG ...(((((((..((((.(...(((((((.....))))))).)))))))))))).. ( -20.70, z-score = -2.50, R) >droYak2.chrX 17145113 55 - 21770863 CGCGUCUUUGGAUGCCAGAGAUCUUCUCGAGGCGGGAGGAGCGGCACAUGGAUGG ..(((((...(.((((.(...((((((((...)))))))).))))))..))))). ( -20.00, z-score = -1.43, R) >droEre2.scaffold_4690 8828016 55 - 18748788 CGUGUCUAUGGAUGCCGGAGAUCUUCUCGAGGCGGGAGGAGCGGCACUUGGAUGG ...(((((.((.(((((....((((((((...)))))))).)))))))))))).. ( -20.70, z-score = -1.78, R) >consensus CGUGUCUAUGGAUGCCAGAGAUCUUCUCGAGGAGGGAGGAGCGGCACGUGGAUGG ..((((((((..((((.....(((((((.....)))))))..)))))))))))). (-18.48 = -18.44 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:28 2011