| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,510,195 – 18,510,286 |
| Length | 91 |
| Max. P | 0.680200 |
| Location | 18,510,195 – 18,510,286 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 84.28 |
| Shannon entropy | 0.28119 |
| G+C content | 0.42677 |
| Mean single sequence MFE | -20.75 |
| Consensus MFE | -14.27 |
| Energy contribution | -13.85 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.680200 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18510195 91 + 22422827 UAGGCAGGCCAUUAAAAAUCGUUUAUUUCGAUUUGAUUUAAUCCAAAAUAGAUUGCCUGUCCUGAGGACCC--AGUGCACACAGUGC------CCAGUG ..(((((((......((((((.......))))))((((((........)))))))))))))(((.((...(--(.((....)).)))------)))).. ( -21.40, z-score = -1.62, R) >droAna3.scaffold_13248 1673703 87 + 4840945 ----GGGGCCAUUAAAAAUCGUUUAUUUCGAUUUGAUUUAAUCCAAAAUAGAUUGCCUGUUCCUCCCAGCCC-CGUAUAGGUUAUGCU----UCCU--- ----(((((......((((((.......))))))............(((((.....))))).......))))-)(((((...))))).----....--- ( -17.60, z-score = -0.97, R) >droEre2.scaffold_4690 8821569 92 + 18748788 ----CAGGCCAUUAAAAAUCGUUUAUUUCGAUUUGAUUUAAUCCAAAAUAGAUUGCCUGUCCUGAGGACCC--AGUGCACACAGCACCCGUGCCCAGU- ----(((((......((((((.......))))))((((((........)))))))))))..(((.((..(.--.((((.....))))..)..))))).- ( -22.40, z-score = -2.64, R) >droYak2.chrX 17138236 91 + 21770863 ----CAGGCCAUUAAAAAUCGUUUAUUUCGAUUUGAUUUAAUCCAAAAUAGAUUGCCUGUCCUGAGGACCCCAAGUGCACACAGUAC---UGCCCAGC- ----(((((......((((((.......))))))((((((........)))))))))))..(((.((......(((((.....))))---).))))).- ( -20.40, z-score = -2.11, R) >droSec1.super_8 814329 90 + 3762037 UAGGCAGGCCAUUAAAAAUCGUUUAUUUCGAUUUGAUUUAAUCCAAAAUAGAUUGCCUGUCCUGAGGACCC--AGUGCACCCAGUGC------CCAGU- (((((((((......((((((.......))))))((((((........))))))))))).)))).......--.(.((((...))))------.)...- ( -21.30, z-score = -1.85, R) >droSim1.chrX_random 4796404 90 + 5698898 UAGGCAGGCCAUUAAAAAUCGUUUAUUUCGAUUUGAUUUAAUCCAAAAUAGAUUGCCUGUCCUGAGGACCC--AGUGCACACAGUGC------CCAGU- ..(((((((......((((((.......))))))((((((........)))))))))))))(((.((...(--(.((....)).)))------)))).- ( -21.40, z-score = -1.76, R) >consensus ____CAGGCCAUUAAAAAUCGUUUAUUUCGAUUUGAUUUAAUCCAAAAUAGAUUGCCUGUCCUGAGGACCC__AGUGCACACAGUGC______CCAGU_ ....(((((......((((((.......))))))((((((........)))))))))))......((.......((((.....))))......)).... (-14.27 = -13.85 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:27 2011