| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,860,870 – 11,860,977 |
| Length | 107 |
| Max. P | 0.691217 |
| Location | 11,860,870 – 11,860,977 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 72.80 |
| Shannon entropy | 0.51446 |
| G+C content | 0.28845 |
| Mean single sequence MFE | -21.65 |
| Consensus MFE | -10.11 |
| Energy contribution | -11.70 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.691217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11860870 107 - 23011544 GUUUAAUAAGGGAAAACAAUCUCGGAACA--CUUCAGUUUUGUUUGAUAAUUAAAGUUGGCAGACAACAGCAAAGCAGUUGUUUUUUAUUGAACAUUUUUAUAACAAGC------- (((((((((((((.(((.(((.((((((.--.....))))))...))).......((((.....)))).........))).)))))))))))))...............------- ( -21.90, z-score = -1.94, R) >droSim1.chr2L 11670699 107 - 22036055 GUUUAAUAAGGAAAAACAAUCUCGAAACA--CUUCAGUUUUGUUUGCUAAUUAAUGUUGGUAGACAAAAGCAAAGCAGUUGUUUUUUAUUGAACAUUUUAGCUAAAUGU------- (((((((((((((.(((......(((...--.)))..((((((((((((((....))))))))))))))........))).)))))))))))))...............------- ( -27.00, z-score = -3.06, R) >droSec1.super_16 64016 114 - 1878335 GUUUAAUAAGGAAAAACAAUCUUGAAUCA--CUUCAGUUUUGUUUGCUAAUUAAAGUUGGUAGACAACAGCAAGGCAGUUGUUUUUUAUUAAACAUUUUUAUAACAAGCUAAAUGU (((((((((((((.(((..(((((((...--.))).(((((((((((((((....)))))))))))).)))))))..))).)))))))))))))...................... ( -27.30, z-score = -3.08, R) >droYak2.chr2L 8282205 114 - 22324452 GUUUAAUAAGCGAAAACAAUCUCGAGACA--CUUCUGUUUUGUUUGCUAAUUAAAGUCGGUAUACAACAGCAAAGUAGUUGAAUUUUAUUCAACAUUUUUAUAACAAUCUUUAUGU .((((((.((((((........(((((((--....))))))))))))).))))))((.(........).))(((((.(((((((...))))))))))))................. ( -16.80, z-score = -0.12, R) >droEre2.scaffold_4929 13091511 112 + 26641161 GCUUAAUAAGAGAAAACAAUCCCGAAACA--CUUAUGUUUUGUUUGCUAAUUAAAGUCGGU--ACAACCGCAAAGUACUUGUUUUUUACUCAACAUUAUCAUAACAUGCUAAAUGU .........((((((((((...(((((((--....))))))).............(.(((.--....)))).......)))))))...)))............((((.....)))) ( -14.90, z-score = 0.16, R) >droAna3.scaffold_12943 2628744 112 + 5039921 GUUGAAAAAAAGAAAACAAUCUCCUAACAAUCUCUUGGUUGGUUUUUCGAUU--UUUCGUUAGUUUACCGAAAA--AACUGUUUGUUUUGGGAGUUUACUUUAAUUUUUUUAAUGA ((((((((((..(((.....((((((((((((....))))).........((--(((((.........))))))--)..........))))))).....)))..)))))))))).. ( -22.00, z-score = -1.11, R) >consensus GUUUAAUAAGGGAAAACAAUCUCGAAACA__CUUCAGUUUUGUUUGCUAAUUAAAGUCGGUAGACAACAGCAAAGCAGUUGUUUUUUAUUGAACAUUUUUAUAACAAGCU_AAUGU ..........((((((((((...(((((........)))))((((((((((....))))))))))............))))))))))............................. (-10.11 = -11.70 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:47 2011