| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,505,608 – 18,505,724 |
| Length | 116 |
| Max. P | 0.717833 |
| Location | 18,505,608 – 18,505,724 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 68.54 |
| Shannon entropy | 0.57550 |
| G+C content | 0.59254 |
| Mean single sequence MFE | -39.22 |
| Consensus MFE | -20.30 |
| Energy contribution | -21.74 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.717833 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18505608 116 - 22422827 UCAAACGAAGAGGAGACCCCACCGAGUUCAGCACGCAAUUCGGCGCCGAGAAACUCCUUCGAGUUUGGCCUCGCAAACGGAACGGGGCCAUACAUCGGACCAGGGGGGGGCGAUAU ..............(.((((.(((((((........)))))))..........(((((((((((.((((((((.........)))))))).)).))))...))))))))))..... ( -39.60, z-score = -0.71, R) >droSec1.super_8 810106 116 - 3762037 UCAAACGAAGAGGAGCCCCCACCGAGUGCACCCCACAAUUCGGCGCCGAGAAACUCCUUCGAGUUUGGCCUCGCAAACGGAACGGGGCCAUACAUCGGACCAGGGGGGGGCAAUAU ..............((((((.((..(((.....))).....((..((((.((((((....))))))(((((((.........))))))).....)))).)).)).))))))..... ( -44.60, z-score = -1.70, R) >droYak2.chrX 17133553 110 - 21770863 UCCAACGACGAGGAGCUCC---GGAAUGCUACACGCAAUCCGGCACCCCGGAACUCCUUCGAGUUUGGCCUCGCCAACGGAACGGGUCCAUACAUCGGACCA---GGUAGUGAUAU (((.....(((((((.(((---((..((((...........))))..))))).)))).))).(((.(((...)))))))))((.(((((.......))))).---.))........ ( -38.90, z-score = -1.57, R) >droEre2.scaffold_4690 8817385 113 - 18748788 UCAAACGACGAGGAGCCCCCCCGCAGGUCACCACGCACUUCGGCGCCGAGGAACUCCUUCGAGUUUGGCCUCGCGAACGGAACGGGGCCAUACAUCGGACCA---GGGAGCGAUAU ..............((.(((.....((((.....((.(....).)).((((....))))(((((.((((((((.........)))))))).)).))))))).---))).))..... ( -37.40, z-score = 0.42, R) >droAna3.scaffold_13248 1668991 110 - 4840945 UUGGCUCAGGAGCAGGCAGCACAGUUGCAUUCACGUAUCUUGCCGCCCAGACACU---UCGAGCCCGGUAUGGAUAGC--AUCUACUACA-GUACUGGAACGACGGCAGGAUACAG ...(((....)))..(((((...)))))......(((((((((((..........---(((...(((((((...(((.--.....)))..-)))))))..)))))))))))))).. ( -35.60, z-score = -1.64, R) >consensus UCAAACGAAGAGGAGCCCCCACCGAGUGCACCACGCAAUUCGGCGCCGAGAAACUCCUUCGAGUUUGGCCUCGCAAACGGAACGGGGCCAUACAUCGGACCA__GGGGGGCGAUAU ..............((((((..................((((....)))).......(((((((.((((((((.........)))))))).)).)))))......))))))..... (-20.30 = -21.74 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:25 2011