| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,489,469 – 18,489,583 |
| Length | 114 |
| Max. P | 0.589330 |
| Location | 18,489,469 – 18,489,583 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 126 |
| Reading direction | reverse |
| Mean pairwise identity | 75.23 |
| Shannon entropy | 0.44843 |
| G+C content | 0.47175 |
| Mean single sequence MFE | -30.97 |
| Consensus MFE | -19.27 |
| Energy contribution | -21.25 |
| Covariance contribution | 1.98 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.589330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18489469 114 - 22422827 -GAUGGGGCGAAAGUUCUGCGGCAUAAAUAAGAGUGCUCGAUAAACGGCAUUACUAUGCACUCGGAAUAAAGUU----UGCCCUCCGGCGAUUCGACACACACUUUUGCUUUUAAGCGG------- -...((((((((.((((((.((((((......(((((.((.....)))))))..))))).).))))))....))----))))))..(((((..............))))).........------- ( -30.14, z-score = -0.70, R) >droSim1.chrX 14280716 112 - 17042790 -GAUGGGGCGAAAGUUCUGCGGCAUAAAUAAGAGUGCUCGAUAAACGGCAUUACUAUGCACUCGGAAUAAAGUU----UGCCCUCCGGCGAUUCGACACACACUUUUGCUUUUAAGG--------- -...((((((((.((((((.((((((......(((((.((.....)))))))..))))).).))))))....))----))))))..(((((..............))))).......--------- ( -30.14, z-score = -1.23, R) >droSec1.super_8 793635 112 - 3762037 -GAUGGGGCGAAAGUUCUGCGGCAUAAAUAAGAGUGCUCGAUAAACGGCAUUACUAUGCACUCGGAAUAAAGUU----UGCCCUCCGGCGAUUCGACACACACUUUUGCUUUUAAGG--------- -...((((((((.((((((.((((((......(((((.((.....)))))))..))))).).))))))....))----))))))..(((((..............))))).......--------- ( -30.14, z-score = -1.23, R) >droYak2.chrX 17117717 122 - 21770863 GAAUGGGGCGAAAGUUCUGCGGCAUAAAUAAGAGUGCUCGAUAAACGGCAUUACUAUGCACUCGGAAUAAAGUU----UGCCCUCCGGCAAUUCGACACACACUUUUGCCUUUGAAGGGAGUCAGU ((((((((((((.((((((.((((((......(((((.((.....)))))))..))))).).))))))....))----))))))......))))(((.(...((((.......)))).).)))... ( -33.60, z-score = -0.88, R) >droEre2.scaffold_4690 8803037 111 - 18748788 -GACGGGGCGAAAGUUGUGGGGCAUAAAUAAGAGUGCUCGAUAAACGGCAUUACUAUGCACUCGGAAUAAAGUU----UGCCCUCCGGCAGUUCGCCACACACUUUUGCUUUCAGG---------- -...(((((((((((.((((((((.......((((((....(((......)))....))))))...........----)))))...(((.....))).))))))))))))))....---------- ( -35.87, z-score = -2.09, R) >droMoj3.scaffold_6473 6154712 116 - 16943266 -GAGGGCGCCACACAGCCAAAUGGCAAUUGAGCAAGUUUUAUG--CGAAACUUAUACCAGCUCCAGCUCCAGUUCCAGUUCCCACCCAUGAUUUGAUAUACGGCUAUUAUAUCAAUCGG------- -..(((.((......(((....)))....(((((((((((...--.))))))).....(((....)))...))))..)).))).....(((((.((((((.......))))))))))).------- ( -25.90, z-score = -0.81, R) >consensus _GAUGGGGCGAAAGUUCUGCGGCAUAAAUAAGAGUGCUCGAUAAACGGCAUUACUAUGCACUCGGAAUAAAGUU____UGCCCUCCGGCGAUUCGACACACACUUUUGCUUUUAAGG_________ ....(((((((((((((((..(((((......((((((........))))))..)))))...)))))....(((....((((....))))....))).....)))))))))).............. (-19.27 = -21.25 + 1.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:24 2011