| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,486,142 – 18,486,212 |
| Length | 70 |
| Max. P | 0.657457 |
| Location | 18,486,142 – 18,486,212 |
|---|---|
| Length | 70 |
| Sequences | 9 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 82.68 |
| Shannon entropy | 0.32916 |
| G+C content | 0.37466 |
| Mean single sequence MFE | -12.92 |
| Consensus MFE | -7.60 |
| Energy contribution | -6.91 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.657457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18486142 70 + 22422827 ---UGCUUUCGGUUUUGUCGGUUAUUGAAUUAGCCCAAUAAACCAGAAAAACAAGACGAGCAUACAAACAUAC ---(((((((.(((((...((((((((........)))).))))...)))))..)).)))))........... ( -13.70, z-score = -2.04, R) >droSim1.chrX 14277421 62 + 17042790 ---UGCUUUCGGUUUUGUCGGUUAUUGAAUUAGCCCAAUAAACCAGAAAAACAAGACGAGCAUAC-------- ---(((((((.(((((...((((((((........)))).))))...)))))..)).)))))...-------- ( -13.70, z-score = -2.13, R) >droSec1.super_8 790367 62 + 3762037 ---UGCUUUCGGUUUUGUCGGUUAUUGAAUUAGCCCAAUAAACCAGAAAAACAAGACGAGCAUAC-------- ---(((((((.(((((...((((((((........)))).))))...)))))..)).)))))...-------- ( -13.70, z-score = -2.13, R) >droEre2.scaffold_4690 8799949 64 + 18748788 ---UGCUUUCGGUUUUGUCGGUUAUUGAAUUAGCCCAAUAAACCAGAAAAACAAGACGAACACACUC------ ---...(((((((((....(((((......)))))....))))).))))..................------ ( -11.60, z-score = -1.11, R) >droAna3.scaffold_13248 1646499 62 + 4840945 ---UGGUUUUGGUUUUGUUGGUUAUUGAAUUAGCCCAAUAAACCAGAAAAACAAGACAAACACAC-------- ---..((((((.((((.((((((((((........)))).)))))).))))))))))........-------- ( -14.80, z-score = -1.96, R) >dp4.chrXL_group3a 423519 65 + 2690836 UGCCUGUCUCACUUUUGUUGGUUAUUGAAUUAGCCCAAUAAACCAGAAAAACAAGACAAACACCC-------- ....(((((...((((.((((((((((........)))).)))))).))))..))))).......-------- ( -13.10, z-score = -2.39, R) >droPer1.super_39 438946 65 - 745454 UGCCUGUCUCACUUUUGUUGGUUAUUGAAUUAGCCCAAUAAACCAGAAAAACAAGACAAACACCC-------- ....(((((...((((.((((((((((........)))).)))))).))))..))))).......-------- ( -13.10, z-score = -2.39, R) >droWil1.scaffold_181150 3464227 62 - 4952429 ---UGUUGACGUUGUUGUUUGUUAUUGAAUUAGCCCAAUAAACCAGAAAAACAAGGCAAACAGAC-------- ---((((..(.(((((.(((.((((((........))))))....))).))))).)..))))...-------- ( -12.00, z-score = -1.54, R) >droGri2.scaffold_15203 1275627 59 + 11997470 ------UGACGCUGUUGUUGGUUAUUGAAUUAGCCCAAUAAACCAGAAAAACAAGACAACAACAC-------- ------....(.(((((((((((((((........)))).)))).(.....)..))))))).)..-------- ( -10.60, z-score = -1.78, R) >consensus ___UGCUUUCGGUUUUGUUGGUUAUUGAAUUAGCCCAAUAAACCAGAAAAACAAGACAAACACAC________ .............((((((((((((((........)))).)))).(.....)..))))))............. ( -7.60 = -6.91 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:23 2011