| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,484,818 – 18,484,896 |
| Length | 78 |
| Max. P | 0.940366 |
| Location | 18,484,818 – 18,484,896 |
|---|---|
| Length | 78 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 75.24 |
| Shannon entropy | 0.40904 |
| G+C content | 0.46333 |
| Mean single sequence MFE | -13.99 |
| Consensus MFE | -8.50 |
| Energy contribution | -9.58 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.940366 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18484818 78 + 22422827 AGUGCAUUAGCCUAAUGGUUUUUCUCACCGAGCAAAACGGGCUAACUAACCAUCCCCAUCUAUGUACAUCCCCAUUCC------------ .((((((.......((((((.......(((.......))).......))))))........))))))...........------------ ( -15.40, z-score = -2.02, R) >droEre2.scaffold_4690 8798679 60 + 18748788 AGUGCAUUAGCCUAAUGGUUUUUCGCACCGAGAAAAAGCGGCUAACUAACCAUUCCCAUC------------------------------ .((...((((((....(.((((((.......)))))).)))))))...))..........------------------------------ ( -11.60, z-score = -0.97, R) >droYak2.chrX 17112077 68 + 21770863 AGUGCAUUAGCCUAAUGGUUUUUCUCACCGCGCCAAACUGGCUAACUAACCAUCCCCAUCCUUAUCCC---------------------- .((...((((((...((((............))))....))))))...))..................---------------------- ( -10.50, z-score = -1.29, R) >droSec1.super_8 789081 90 + 3762037 AGUGCAUUAGCCUAAUGGUUUUUCUCACCGAGCAAAACCGGCUAACUAACCAUCCCCAUCUAUGUACAUAGCCAUUCCCAUUUCCAUCCC .(((((((((((....((((((.(((...))).))))))))))).................))))))....................... ( -16.72, z-score = -3.16, R) >droSim1.chrX 14276138 84 + 17042790 AGUGCAUUAGCCUAAUGGUUUUUCUCACCGAGCAAAACCGGCUUACUAACCAUCCCCAUCUAUGUACAUCGCCAUUCCCAUUCC------ .((((((.((((....((((((.(((...))).))))))))))..................)))))).................------ ( -15.71, z-score = -2.77, R) >consensus AGUGCAUUAGCCUAAUGGUUUUUCUCACCGAGCAAAACCGGCUAACUAACCAUCCCCAUCUAUGUACAU__CCAUUCC____________ .((...((((((....((((((.(((...))).))))))))))))...))........................................ ( -8.50 = -9.58 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:22 2011