| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,449,333 – 18,449,402 |
| Length | 69 |
| Max. P | 0.742898 |
| Location | 18,449,333 – 18,449,402 |
|---|---|
| Length | 69 |
| Sequences | 4 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 80.33 |
| Shannon entropy | 0.32088 |
| G+C content | 0.63421 |
| Mean single sequence MFE | -24.62 |
| Consensus MFE | -19.10 |
| Energy contribution | -19.23 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.742898 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18449333 69 + 22422827 UAUGGAGUAGAGCCUGGCGGUGGCCAAGGCGAAGCCACCGGCAUCCGACCAUACACUGAGCGAAAGCGA--- (((((......(((((((....))).))))((.(((...))).))...)))))......((....))..--- ( -24.80, z-score = -1.70, R) >droSim1.chrX_random 4784091 69 + 5698898 UGUGGAGGAGAGCCUGGCGGUGGCCAAGGCGGAGCCACCGGCAUCCGACCAUACACUGAGCGAAAGCGA--- (((((.(((..(((.((.(((.((....))...))).))))).)))..)))))......((....))..--- ( -28.60, z-score = -1.95, R) >droSec1.super_8 755416 57 + 3762037 -AUGGAGGAGAGCCUGGCGGUGGCCAAGGCGAAGCCACCGGCAUCCGACCAUACACUG-------------- -((((.(((..(((.((.(((.((....))...))).))))).)))..))))......-------------- ( -22.60, z-score = -1.70, R) >droEre2.scaffold_4690 8764994 67 + 18748788 -AUGGAGCG----CUGGCGGUGGCCAAGGCGAAGCCACCGGCAUCCGGCCAUACACUGAGCGAAACACUGAA -.((((..(----((((.(((.((....))...))).))))).))))((((.....)).))........... ( -22.50, z-score = -0.23, R) >consensus _AUGGAGGAGAGCCUGGCGGUGGCCAAGGCGAAGCCACCGGCAUCCGACCAUACACUGAGCGAAAGCGA___ .((((.(((.....((.(((((((.........))))))).)))))..)))).................... (-19.10 = -19.23 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:18 2011