| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,831,820 – 11,831,961 |
| Length | 141 |
| Max. P | 0.768138 |
| Location | 11,831,820 – 11,831,961 |
|---|---|
| Length | 141 |
| Sequences | 5 |
| Columns | 144 |
| Reading direction | reverse |
| Mean pairwise identity | 58.54 |
| Shannon entropy | 0.71204 |
| G+C content | 0.31143 |
| Mean single sequence MFE | -26.68 |
| Consensus MFE | -6.63 |
| Energy contribution | -8.75 |
| Covariance contribution | 2.12 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.768138 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 11831820 141 - 23011544 AAAUUGGAAUAAUAUUUUUAAGGGUUUUUACAGAACUCAACA---UUCCAGCUAGCAAUUUUUUUUAUUAUUGAAUAUCUUUUAUCGAGCCUAUUGAUUGCAAAACAUAUUGUUAGCUUGAAUACUGAGCCUAAUUGCUGUUUU .((((((..............((((((.....))))))...(---(((.((((((((((...((((...((..(....(((.....)))....)..))...))))...)))))))))).)))).......))))))........ ( -24.30, z-score = -0.41, R) >droEre2.scaffold_4929 13057640 107 + 26641161 AAAUCGGAAUAAUAUUUUUUAGGAUUUUUCCGGGACUCAGCA---UUCCAGCUAGCAAAAUCUCCA-------------------------------CCAUACAGC--AUUGUUAGCUUGAGUACUGGGCCUCCUCACUUUUU- .....(((.............(((....))).((.(((((.(---(((.(((((((((........-------------------------------.........--.))))))))).)))).)))))))))).........- ( -28.37, z-score = -2.81, R) >droSim1.chr2L 11641889 122 - 22036055 AAAUUGGAAUAAUAUUUUUUAGGAUUUUUACAGGACUCAGCA---UUUAAGCUAGCAAUUUUUUUU---AU----------------GCUAUUUUAUUCGCAAAGCAUAUUGCUAGCUUGAAUAUUGAGCCGAAUUACAGUUUU ((((((((((..((.....))..)))).....((.(((((.(---(((((((((((((.......(---((----------------(((.............)))))))))))))))))))).)))))))......)))))). ( -33.33, z-score = -4.06, R) >droSec1.super_16 34949 125 - 1878335 AAAUUGGAAUAAUAUUUUUUAGGAUUUUUACAGGACUCAGCA---UUUAAGAUAGCAAUUUUUUUGUUGAU----------------ACUAUUUUAUUCGCAAAGCAUAUUGCUAGCUUGAAUACUGAGCCGAAUUACUGUUUU ...((((((.......))))))..........((.(((((.(---((((((.(((((((..((((((.(((----------------(......)))).))))))...))))))).))))))).)))))))............. ( -30.40, z-score = -3.49, R) >droMoj3.scaffold_6500 15435970 125 + 32352404 -----------AUAUAUUUUUGAUUUUUCCAAAAACAUAAUAUAGUUCCAAUUCUCGGUGUAUUGAAUUAUUGA------UGUCUCUCUACUCUUAAGUAUAGAGUUGGUUCCC--CUCGUGUUCUCCAGAUGACAACUGUUUU -----------.(((.((((((.......)))))).)))..(((((((((((((((((((........))))))------........((((....))))..))))))).....--...((..((....))..))))))))... ( -17.00, z-score = 0.51, R) >consensus AAAUUGGAAUAAUAUUUUUUAGGAUUUUUACAGGACUCAGCA___UUCCAGCUAGCAAUUUUUUUA_U_AU________________ACUAUUUUAAUCGCAAAGCAUAUUGCUAGCUUGAAUACUGAGCCUAAUUACUGUUUU ................................((.(((((.....(((.((((((((((.................................................)))))))))).)))..)))))))............. ( -6.63 = -8.75 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:33:46 2011