| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,435,442 – 18,435,550 |
| Length | 108 |
| Max. P | 0.853472 |
| Location | 18,435,442 – 18,435,550 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 76.22 |
| Shannon entropy | 0.43741 |
| G+C content | 0.40894 |
| Mean single sequence MFE | -24.95 |
| Consensus MFE | -13.88 |
| Energy contribution | -14.72 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.853472 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18435442 108 - 22422827 GGUUGCACGGUGGGAAAGGCCCAUUUUUCCUCUCACAUUACCUAAG-CGAGCAUCUUCGUUUAUCUUGAACUUGACACAAUAAAUUGCUCUGCGUGCCACAUCAUUAAA--------- .((.(((((..((((((((....))))))))..)...........(-((((((.....((((((..((.......))..))))))))))).)))))).)).........--------- ( -24.80, z-score = -1.18, R) >droSim1.chrX 14231091 108 - 17042790 GGUUGCACGGUGGGAAAGGCUCACUUUUCCACUCACAUUACCUAAG-CGAGCAUCUUCGUUUAUCUUGAACUUGACACAAUAAAUUGCUCUGCGUGCCACAUCAUUAAA--------- .((.((((((((((((((.....))))))))))............(-((((((.....((((((..((.......))..))))))))))).)))))).)).........--------- ( -30.80, z-score = -3.43, R) >droSec1.super_8 741551 108 - 3762037 GGUUGCACGGUGGGAAAGGCUCAUUUUUCCACUCACAUUACCUAAG-CGAGCAUCUUCGUUCAUCUUGAACUUGACACAAUAAAUUGCUCUGCGUGCCACAUCAUUAAA--------- .((.((((((((((((((.....))))))))))............(-((((((((...((((.....))))..))..........))))).)))))).)).........--------- ( -28.50, z-score = -2.55, R) >droYak2.chrX 17064344 109 - 21770863 GGUUGCACGGUGGGAACGGCUCAGUUUUCCACUCACAUUAACUAAGCCGAGCAUCUUCGUUUAUCUUGAACUUGACACAAUAAAUUGCUCUGCGUGCCACAUCAUUAAA--------- .((.(((((((((((((......).))))))))............((.(((((.....((((((..((.......))..))))))))))).)))))).)).........--------- ( -27.20, z-score = -1.75, R) >droEre2.scaffold_4690 8751079 108 - 18748788 GGUUGCACGGUGGGAAAUGCCCAUUUUGCCUCUCACAUUACUUAAG-CGAGCAUCUUCGUUUAUCUUGAACUUGACACAAUAAAUUGCUCUGCGUGCCACAUCAUUAAA--------- .((.((((.((((((...((.......)).)))))).........(-((((((.....((((((..((.......))..))))))))))).)))))).)).........--------- ( -24.60, z-score = -1.05, R) >droGri2.scaffold_15203 1202147 110 - 11997470 -----UGUUGCAUUAAUUAUUCAUCAUUGUUCGCUCAGU-UUCAUGGCUGAUUUGUUAACCAAUAUUGAAUACUAU-CAACUUAUUUCUAUCCUUAACAAAUC-UCAAAUUUAGCAAA -----.((((.((....((((((..((((((.(((((((-(....))))))...)).)).))))..))))))..))-))))......................-.............. ( -13.80, z-score = -0.77, R) >consensus GGUUGCACGGUGGGAAAGGCUCAUUUUUCCACUCACAUUACCUAAG_CGAGCAUCUUCGUUUAUCUUGAACUUGACACAAUAAAUUGCUCUGCGUGCCACAUCAUUAAA_________ .((.(((((((((((((((....)))))))...)))............(((((..........((........))..........)))))..))))).)).................. (-13.88 = -14.72 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:11 2011