Locus 15325

Sequence ID dm3.chrX
Location 18,431,864 – 18,431,971
Length 107
Max. P 0.779073
window21113

overview

Window 3

Location 18,431,864 – 18,431,971
Length 107
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 85.78
Shannon entropy 0.27522
G+C content 0.53198
Mean single sequence MFE -33.08
Consensus MFE -17.74
Energy contribution -19.30
Covariance contribution 1.56
Combinations/Pair 1.09
Mean z-score -2.55
Structure conservation index 0.54
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.66
SVM RNA-class probability 0.779073
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18431864 107 + 22422827
GUGUUCCCUGACCAUUCCAUGGUGUUCUGUCCCGCGGACCCCGCAUUCUGGUAAUCCUUUAAUUUAUGACACUCUGGCACUCAACUAGAACGGACAGCAGGGAACCG
(.(((((((((((((...)))))...((((((.((((...)))).(((((((...((..................))......))))))).))))))))))))))). ( -36.37, z-score =  -3.06, R)
>droSim1.chrX 14227581 104 + 17042790
GUGUUCCCUGACCAUUCCGUGGUGUUCUGCCCCGCGGACCCCGCGUUCUGGUAAUCCUUUAAUUUAUGACACUCUGGCACUCAACUAGAACGGACAG---GGAACCG
(.((((((((.((..(((((((.(.....).)))))))......((((((((...((..................))......)))))))))).)))---)))))). ( -37.47, z-score =  -3.35, R)
>droSec1.super_8 738032 104 + 3762037
GUGUUCCCUGACCAUUCCGUGGUGUUCUGCCCCGCGGACCCCGCGUUCUGGUAAUCCUUUAAUUUAUGACACUCUGGCACUCAACUAGAACGGACAG---GGAACCG
(.((((((((.((..(((((((.(.....).)))))))......((((((((...((..................))......)))))))))).)))---)))))). ( -37.47, z-score =  -3.35, R)
>droYak2.chrX 17060677 104 + 21770863
GUGUUCCCUGGCCAUUCCGUGGUGCUCUGUCCCGCGGAGCCCGCGUUCUGGUAAUCCUUUAAUUUAUGACACUCUGGCACUCAACUAGAACGGACAG---GGAACCG
(.((((((((.((.....((((.((((((.....))))))))))((((((((...((..................))......)))))))))).)))---)))))). ( -42.97, z-score =  -4.21, R)
>droEre2.scaffold_4690 8747481 104 + 18748788
GUGUUCCCUGACCAUUCCGUGGUGUUCUUCCCCGCGGACCCCGUGUUGUGGUAAUCCUUUAAUUUAUGACACUCUGGCACUCAACUAGAACGGACAG---GGAGCCG
(.((((((((.((..(((((((.(.....).)))))))....((((..(((............)))..))))(((((.......)))))..)).)))---)))))). ( -37.50, z-score =  -2.96, R)
>droAna3.scaffold_13248 1576036 84 + 4840945
GUGUUCUCUGACCAUUCCA-------CUCCCCUCCGG-----------UG--AAUCCUUUAAUUUAUGACACUCUUGCAACCAACUAGAACGGCCAA---CGAUCAG
.((.((..((.((.(((((-------((.......))-----------))--..............((.((....))))........))).)).)).---.)).)). (  -6.70, z-score =   1.65, R)
>consensus
GUGUUCCCUGACCAUUCCGUGGUGUUCUGCCCCGCGGACCCCGCGUUCUGGUAAUCCUUUAAUUUAUGACACUCUGGCACUCAACUAGAACGGACAG___GGAACCG
..((((((((.((..(((((((.(.....).)))))))..................................(((((.......)))))..)).)))...))))).. (-17.74 = -19.30 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:10 2011