| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,425,199 – 18,425,311 |
| Length | 112 |
| Max. P | 0.605239 |
| Location | 18,425,199 – 18,425,311 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 86.89 |
| Shannon entropy | 0.22566 |
| G+C content | 0.48344 |
| Mean single sequence MFE | -23.60 |
| Consensus MFE | -19.12 |
| Energy contribution | -18.96 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.605239 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18425199 112 - 22422827 GCUUCUUGGGUUCGCGGCAAAUUGUUAUUGCAAUUAUUAUUGCUCGCUUGUUGUCAACAUAUUGAUAAUGCCCCG-CCCCUUCAUACCCGACCCGCCUCCCGAACUGUACAUA ((...(((((...((((..((((((....))))))......((..((..((((((((....))))))))))...)-)...............))))..)))))...))..... ( -23.40, z-score = -1.16, R) >droSim1.chrX_random 4778766 109 - 5698898 GCUUCUUGGGUUCGCGGCAAAUUGUUAUUGCAAUUAUUAUUGCUGCCUUGUUGUCAACAUAUUGAUAAUGCCCCGCCCCCUUUAUCCCCGACCCGCCUCCCGAACUGUU---- .......(((((.((((((((((((....))))).....)))))))...((((((((....))))))))....................)))))...............---- ( -23.30, z-score = -1.72, R) >droSec1.super_8 731305 108 - 3762037 GCUUCUUGGGUUCGCGGCAAAUUGUUAUUGCAAUUAUUAUUGCUGGCUUGUUGUCAACAUAUUGAUAAUGCCCCG-CCCCUUUAUCCCCGACCCGCCUCCCAAACUGUU---- .....(((((...((((..((((((....))))))......((.(((..((((((((....)))))))))))..)-)...............))))..)))))......---- ( -26.80, z-score = -2.22, R) >droYak2.chrX 17054193 106 - 21770863 GCUUCUUGGGUUCGCGGCAAAUUGUUAUUGCAAUUAUUAUUGCUCGCUUGUUGUCAACAUAUUGAUAAUGCCCCG-CCCCUUCAGCCCC--UCCCCAACCCACCCUACA---- (((....((((..((((((((((((....))))).....)))).)))..((((((((....)))))))).....)-)))....)))...--..................---- ( -22.70, z-score = -1.90, R) >droEre2.scaffold_4690 8740711 99 - 18748788 GCUUCUUGGGUUCGCGGCAAAUUGUUAUUGCAAUUAUUAUUGCUGGCUUGUUGUCAACAUAUUGGUAAUGCCCCG-CCCCUUCGUCC----CUCCCCUCCUGCA--------- ((.....(((..((.(((.((((((....))))))..((((((..(..(((.....)))..)..))))))....)-))....))...----..))).....)).--------- ( -21.80, z-score = -0.41, R) >consensus GCUUCUUGGGUUCGCGGCAAAUUGUUAUUGCAAUUAUUAUUGCUGGCUUGUUGUCAACAUAUUGAUAAUGCCCCG_CCCCUUCAUCCCCGACCCGCCUCCCGAACUGUA____ .......(((..((.(((...........(((((....)))))......((((((((....))))))))))).))..)))................................. (-19.12 = -18.96 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:09 2011