| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,419,218 – 18,419,295 |
| Length | 77 |
| Max. P | 0.591058 |
| Location | 18,419,218 – 18,419,295 |
|---|---|
| Length | 77 |
| Sequences | 6 |
| Columns | 83 |
| Reading direction | forward |
| Mean pairwise identity | 58.71 |
| Shannon entropy | 0.73850 |
| G+C content | 0.60731 |
| Mean single sequence MFE | -29.30 |
| Consensus MFE | -8.69 |
| Energy contribution | -9.63 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.591058 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18419218 77 + 22422827 GGCUGCUCGUCUGCUGCCCGCUGCUGUGCUG-AACCACUAGCAACUGCUGGUUG---GGCGGGGGGGCGGUGGA--CUCGAAC ........(((..((((((.((....((((.-(((((...((....))))))).---)))))).))))))..))--)...... ( -34.90, z-score = -1.74, R) >droAna3.scaffold_13248 1563135 65 + 4840945 ACUUUCUCCCUUUUUACCUAUUUUUGUACCCCCUAUUGUUCGACUUAGUGGUGG------GGUGAGUAAGU------------ ((((.(((.......((........))(((((((((((.......)))))).))------)))))).))))------------ ( -15.40, z-score = -1.46, R) >droYak2.chrX 17049592 79 + 21770863 AGUUGCUAGUCAGCUGCCCGCGGCUGUGCUG-AACCAGUAGCAACUGCUGGUUG---GGCGGCGGGGGAUUCGAAGUUCGAAC ..(((((...((((((....)))))).(((.-(((((((((...))))))))).---))))))))....((((.....)))). ( -33.00, z-score = -1.49, R) >droSec1.super_8 725376 72 + 3762037 AGCUGCUAGUCUGCUGCCCGCGGCUGUGCUG-AACCACUAGCAACUGCUGCUUG---GGCGGCGGGGGACUCGAAC------- .........(((((((((((((((..(((((-......)))))...)))))..)---)))))))))..........------- ( -32.40, z-score = -1.75, R) >droSim1.chrX_random 4772401 72 + 5698898 GACUGCUAGUCUGCUGCCCGCGGCUGUGCUG-AACCACUAGCAACUGCUGGUUG---GGCGGCGGGGGACUCGAAC------- .....(.(((((.(((((.(((((...))).-..((((((((....))))).))---)))))))).))))).)...------- ( -30.00, z-score = -1.54, R) >droVir3.scaffold_12726 2234897 75 + 2840439 GGCCA-UAGUUUUUGGCACGUAUGUGUGCUGCGACCAGCAACGGGUGGCGGUUGCCGGGUGGCGGGUGGCGGGUAA------- .((((-(.......((((((....))))))((.(((.(((((.(....).)))))..))).))..)))))......------- ( -30.10, z-score = -0.62, R) >consensus AGCUGCUAGUCUGCUGCCCGCGGCUGUGCUG_AACCACUAGCAACUGCUGGUUG___GGCGGCGGGGGACUCGAA________ ................(((((.(((.......(((((.((.....)).)))))....))).)))))................. ( -8.69 = -9.63 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:08 2011