| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,414,574 – 18,414,692 |
| Length | 118 |
| Max. P | 0.934648 |
| Location | 18,414,574 – 18,414,692 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 123 |
| Reading direction | forward |
| Mean pairwise identity | 68.09 |
| Shannon entropy | 0.50881 |
| G+C content | 0.36323 |
| Mean single sequence MFE | -17.08 |
| Consensus MFE | -13.98 |
| Energy contribution | -13.79 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.934648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18414574 118 + 22422827 GUUGCCUGAAAGUAUGCUCCAUAAUCCCAUAAUACCCACC--AACACAUGCCAC---UUUUUUUUUCUAUACUUUUAGGCUUUUGCGUAAUAAGUUUUGAUCCAAUUAGCAUUCCGUUCCGAA ...(((((((((((((........................--............---..........)))))))))))))...(((.((((.............)))))))............ ( -14.97, z-score = -0.50, R) >droSec1.super_8 720769 91 + 3762037 GUUGCCUGAAAGUAUGCUCCAUAUUC---AAAUACCC-----AACACACGCCA---------UUUUUUAUACUUUUAGGCAUUUGCGUUAUAAGUUUUGAUCCCAUUU--------------- ..((((((((((((((..........---........-----...........---------.....))))))))))))))...........................--------------- ( -15.38, z-score = -2.03, R) >droYak2.chrX 17044746 103 + 21770863 GUUGCCUGAAAGUAUGCUCCAAAAUCGAUUACCAAC---------ACAUGCAA------CCAAUUUUUAUACUUUUAGGCAUUUGCGUAAAAUGUUUUGAUACCCUUAGUAUUUCAAA----- ..((((((((((((((....(((((.(.........---------........------.).)))))))))))))))))))...........((....(((((.....))))).))..----- ( -16.87, z-score = -1.09, R) >droEre2.scaffold_4690 8731097 118 + 18748788 GUUGCCUGAAAGUAUGCUCCAAAAUCGGAUGCCAACCCCACAUAAAUAUCCAACACAUGCCUAUUUUUAUACUUUUGGGCGUGUGCGUAAUAAGUUUCGAUCCCAUUAGUAUUCCAAA----- (((((..........(((((......))).)).....................((((((((((............)))))))))).)))))...........................----- ( -21.10, z-score = -0.38, R) >consensus GUUGCCUGAAAGUAUGCUCCAAAAUCG_AUAACAACC_____AACACAUGCAA______CCUAUUUUUAUACUUUUAGGCAUUUGCGUAAUAAGUUUUGAUCCCAUUAGUAUUCCAAA_____ ...(((((((((((((...................................................)))))))))))))........................................... (-13.98 = -13.79 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:06 2011