Locus 15320

Sequence ID dm3.chrX
Location 18,405,110 – 18,405,227
Length 117
Max. P 0.843884
window21106 window21107

overview

Window 6

Location 18,405,110 – 18,405,227
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 82.36
Shannon entropy 0.31879
G+C content 0.47060
Mean single sequence MFE -35.18
Consensus MFE -18.71
Energy contribution -19.03
Covariance contribution 0.32
Combinations/Pair 1.10
Mean z-score -2.07
Structure conservation index 0.53
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.04
SVM RNA-class probability 0.512490
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18405110 117 + 22422827
CUUAUGGGGCGUCGUAAAGUGGGGCAAUCAAGCGCUAAACCCGCUAAUUGCCCACAUUCGACA-GUUUUGAUAAACUUGUCUUGGAACA-AACGCAU-UGCCAUGGAUAUGACGCAUUUC
........((((((((.(((((((((((..((((.......)))).))))))).)))).((((-((((....)))).)))).(((..((-(.....)-)))))....))))))))..... ( -34.80, z-score =  -1.82, R)
>droEre2.scaffold_4690 8722314 94 + 18748788
CUUAUGGGCCGUCGUAAAG------------------------CUAAUUGCCGACAUUCGACAAGUUUUGAUAAACU-CUUUUGCAAACGAACGCGU-UGCCAUGGGUAUGACGCAUUUC
.......((.(((((((((------------------------((...((.((.....)).)))))))).....(((-(....((((.((....)))-)))...)))))))))))..... ( -17.90, z-score =   1.07, R)
>droYak2.chrX 17036162 118 + 21770863
CUUAUGGGGCGUCGUAAAGCGGGGCAAUUAGGCGCUAAACCCGCUAAUUGCCGGCAUUCGACA-GUUUUGAUAAACU-GUCUUGGAGUAUAACGAAUAUAACGUGGAUAUGACGCAUUUC
........((((((((..(((.(((((((((.((.......)))))))))))...((((((((-((((....)))))-)))..(........)))))....)))...))))))))..... ( -39.60, z-score =  -3.03, R)
>droSec1.super_8 711306 115 + 3762037
CUUAUGGGGCGUCGUAAAGCGGGGCAAUCAAGCGCUAAACCCGCUAAUUGCCCACAUUCGACA-GUUUUGAUAAACU-GUCUUGGAACG-AACGCGU--UGCCUGGAUAUGACGCAUUUC
........((((((((.....(((((((..((((.......)))).)))))))...(((((((-((((....)))))-)))..((((((-....)))--).)).)))))))))))..... ( -41.20, z-score =  -3.09, R)
>droSim1.chrX 14210672 116 + 17042790
CUUAUGGGGCGUCGUAAAGCGGGGCAAUCAAGCGCUAAACCCGCUAAUUGCCCACAUUCGACA-GUUUUGAUAAACU-GUCUUGGAACG-AACGCGU-UGCCAUGGAUAUGACGCAUUUC
........((((((((.....(((((((..((((.......)))).)))))))...(((((((-((((....)))))-))).(((((((-....)))-).))).)))))))))))..... ( -42.40, z-score =  -3.45, R)
>consensus
CUUAUGGGGCGUCGUAAAGCGGGGCAAUCAAGCGCUAAACCCGCUAAUUGCCCACAUUCGACA_GUUUUGAUAAACU_GUCUUGGAACA_AACGCGU_UGCCAUGGAUAUGACGCAUUUC
........((((((((.((((((................))))))..............(((..((((....))))..)))..........................))))))))..... (-18.71 = -19.03 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

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Window 7

Location 18,405,110 – 18,405,227
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.36
Shannon entropy 0.31879
G+C content 0.47060
Mean single sequence MFE -34.22
Consensus MFE -17.60
Energy contribution -19.70
Covariance contribution 2.10
Combinations/Pair 1.15
Mean z-score -2.57
Structure conservation index 0.51
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.88
SVM RNA-class probability 0.843884
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18405110 117 - 22422827
GAAAUGCGUCAUAUCCAUGGCA-AUGCGUU-UGUUCCAAGACAAGUUUAUCAAAAC-UGUCGAAUGUGGGCAAUUAGCGGGUUUAGCGCUUGAUUGCCCCACUUUACGACGCCCCAUAAG
.....(((((.......(((.(-((.....-.)))))).((((.((((....))))-))))...((.((((((((((((.......))).)))))))))))......)))))........ ( -34.10, z-score =  -1.87, R)
>droEre2.scaffold_4690 8722314 94 - 18748788
GAAAUGCGUCAUACCCAUGGCA-ACGCGUUCGUUUGCAAAAG-AGUUUAUCAAAACUUGUCGAAUGUCGGCAAUUAG------------------------CUUUACGACGGCCCAUAAG
.....(((((((....))))).-...(((.(((..((....(-(((((....))))))((((.....)))).....)------------------------)...))))))))....... ( -21.00, z-score =  -0.33, R)
>droYak2.chrX 17036162 118 - 21770863
GAAAUGCGUCAUAUCCACGUUAUAUUCGUUAUACUCCAAGAC-AGUUUAUCAAAAC-UGUCGAAUGCCGGCAAUUAGCGGGUUUAGCGCCUAAUUGCCCCGCUUUACGACGCCCCAUAAG
.....(((((.............................(((-(((((....))))-))))....((.(((((((((.(.(.....).))))))))))..)).....)))))........ ( -33.20, z-score =  -3.29, R)
>droSec1.super_8 711306 115 - 3762037
GAAAUGCGUCAUAUCCAGGCA--ACGCGUU-CGUUCCAAGAC-AGUUUAUCAAAAC-UGUCGAAUGUGGGCAAUUAGCGGGUUUAGCGCUUGAUUGCCCCGCUUUACGACGCCCCAUAAG
.....(((((.......(...--.)(((..-(((((...(((-(((((....))))-))))))))).((((((((((((.......))).)))))))))))).....)))))........ ( -41.50, z-score =  -3.78, R)
>droSim1.chrX 14210672 116 - 17042790
GAAAUGCGUCAUAUCCAUGGCA-ACGCGUU-CGUUCCAAGAC-AGUUUAUCAAAAC-UGUCGAAUGUGGGCAAUUAGCGGGUUUAGCGCUUGAUUGCCCCGCUUUACGACGCCCCAUAAG
.....(((((........(...-.)(((..-(((((...(((-(((((....))))-))))))))).((((((((((((.......))).)))))))))))).....)))))........ ( -41.30, z-score =  -3.59, R)
>consensus
GAAAUGCGUCAUAUCCAUGGCA_ACGCGUU_CGUUCCAAGAC_AGUUUAUCAAAAC_UGUCGAAUGUGGGCAAUUAGCGGGUUUAGCGCUUGAUUGCCCCGCUUUACGACGCCCCAUAAG
..(((((((..............)))))))............................((((((.((((((((((((((.......))).)))))).))))).)).)))).......... (-17.60 = -19.70 +   2.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:05 2011