| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,402,813 – 18,402,912 |
| Length | 99 |
| Max. P | 0.888600 |
| Location | 18,402,813 – 18,402,912 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 76.01 |
| Shannon entropy | 0.38877 |
| G+C content | 0.56236 |
| Mean single sequence MFE | -41.64 |
| Consensus MFE | -19.98 |
| Energy contribution | -19.34 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.888600 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18402813 99 + 22422827 AGGACCUGGUCGAGU--GGAG-----UGGUGG-AUCGGCGGUGUCGAUUAGCUUUGAUUUUGGACGCCGCUAUCGGA------AAACAGCC------AAUUCGCCGAGUCACUCGCUGG .....(..(.(((((--((..-----((((((-((.(((((((((.(..(.......)..).)))))))))...((.------......))------.))))))))..))))))))..) ( -40.60, z-score = -2.39, R) >droSec1.super_8 708983 98 + 3762037 AGGACCCGGUCGAGU--GGAG-----CGGUGG-AGCGGCGGUGUCGAUUAGCUUUGAUUU-GGACGCCGCUAUCGGA------AAUCAGCC------AGUCCGCCGAGUCACUCGCGGG ....((((..(((((--((..-----((((((-(((((((..(((((......)))))..-...))))))....((.------......))------..)))))))..))))))))))) ( -47.70, z-score = -2.96, R) >droYak2.chrX 17033801 99 + 21770863 AGGAGCUGGUCGAGU--GGAG-----CGGUGGCGAAGGCGGUGUCGAUUAGCUUUGAUUU-GGACGCCGCUAUCGGA------AAUCAGCC------AAUCCGCCGAGUCACUCGACGG ........(((((((--((..-----((((((.((.((((((((((((((....))))).-.))))))))).))((.------......))------...))))))..))))))))).. ( -47.00, z-score = -3.60, R) >droEre2.scaffold_4690 8720199 98 + 18748788 AGGACCUGGUCGAGU--GGAG-----CGGUGG-AGCGGCGGUGUCGAUUAGCUUUGAUUU-GGACGCCGCUAUCGGA------AAUCAGCC------AAUCCGCCGAGUCACUCAAUGG ..(((...)))((((--((..-----((((((-(((((((..(((((......)))))..-...))))))....((.------......))------..)))))))..))))))..... ( -41.30, z-score = -2.40, R) >droAna3.scaffold_13248 1542201 117 + 4840945 -GAAGCUGUUCAGGUUUGGAGUGCCCCGGCGGUGGCGGUUCCAACGAUUAGCUUUGAUUU-CGGCGCCGUUAUCGAAUAAAAAAAAAAAUCGAAUAAAAAUCGCCAAGUCAUUUUCAAA -(((((((.((..(((.(((.((((((...)).)))).))).))))).)))))))(((((-.((((...(((((((.............))).))))....)))))))))......... ( -31.62, z-score = -0.88, R) >consensus AGGACCUGGUCGAGU__GGAG_____CGGUGG_AGCGGCGGUGUCGAUUAGCUUUGAUUU_GGACGCCGCUAUCGGA______AAUCAGCC______AAUCCGCCGAGUCACUCGCUGG ..................(((.....((((((....((((((((((((((....)))))...)))))))))...((.............)).........)))))).....)))..... (-19.98 = -19.34 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:02 2011