Locus 15317

Sequence ID dm3.chrX
Location 18,376,718 – 18,376,813
Length 95
Max. P 0.577589
window21102

overview

Window 2

Location 18,376,718 – 18,376,813
Length 95
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 85.92
Shannon entropy 0.22214
G+C content 0.45861
Mean single sequence MFE -24.10
Consensus MFE -20.10
Energy contribution -18.60
Covariance contribution -1.50
Combinations/Pair 1.39
Mean z-score -1.37
Structure conservation index 0.83
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.17
SVM RNA-class probability 0.577589
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18376718 95 - 22422827
UCUCGUUUGUUUUUCCCUUACCAUUUCGACGAGGGCUUCCCCUGUUGUGAAAAUGAUGUUUUCCAUUUUCGGUUUUGAUAAGGCUGAUAAGCGUU
...((((((((....(((((.((...((((.((((....))))))))((((((((........))))))))....)).)))))..)))))))).. ( -25.90, z-score =  -2.60, R)
>droEre2.scaffold_4690 8694361 92 - 18748788
UCUGGCUGGUUAUUCCCUUGCCAUUGCGACGAGGGCUUCCCCUGGCGUGAAA---AUGUUUUUCAAUUUCGGCCUUGAUAGGGCUGAUAAGCUUG
..((((.((......))..))))(..((.(.((((....)))).)))..)..---.............(((((((.....)))))))........ ( -28.00, z-score =  -0.83, R)
>droSec1.super_8 682741 92 - 3762037
UCUCGCUUGUUUUUCCCCUACCAUCUCGACGUGGGCAUCCCCUGUUGUGAAA---AUGUUUUCCAAUUUCGGCUUUGAUAAGGCUGAUAAGCGUC
...((((((..............((.(((((.(((....)))))))).))..---.............(((((((.....))))))))))))).. ( -22.90, z-score =  -1.75, R)
>droSim1.chrX_random 4756133 92 - 5698898
UCUCGCUUGUUUUUCCCCUACCAUCUCGACGUGGGCAUCCCCUGUUGUGAAA---AUGUUUUCCAAUUUCGGUUUUGAUAAGGCUGAUAGGUGUC
...((((((((.....(((....((.(((((.(((....)))))))).))..---.((((..((......))....)))))))..)))))))).. ( -19.60, z-score =  -0.31, R)
>consensus
UCUCGCUUGUUUUUCCCCUACCAUCUCGACGAGGGCAUCCCCUGUUGUGAAA___AUGUUUUCCAAUUUCGGCUUUGAUAAGGCUGAUAAGCGUC
...((((((..............((.(((((.(((....)))))))).))..................(((((((.....))))))))))))).. (-20.10 = -18.60 +  -1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:57:01 2011